Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq20 143 3e-28 seq7 134 2e-25 seq9 125 9e-23 seq1 93.3 5e-13 seq18 87.8 2e-11 >seq20 Length=149338601 Score = 143 bits (158), Expect = 3e-28 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| |||||| ||| | |||||||||||| ||||||||||| || | ||| || Sbjct 24213403 GCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTC 24213344 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 ||||||||| | ||||||| || || ||| ||||||| |||| |||||| Sbjct 24213343 GAGCGCTTGTTGTAATGCGCCAAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCG 24213284 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527 ||||||||||||||||||| ||| | |||| |||||||| ||| ||||||||| Sbjct 24213283 TTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACC 24213224 Query 1254528 TGCTTGAGCACCTTGTA 1254544 ||||| ||||||||||| Sbjct 24213223 TGCTTTAGCACCTTGTA 24213207 Score = 123 bits (136), Expect = 3e-22 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428 ||||||||||| ||||||||||| || | ||| || ||||||||| | || ||| Sbjct 24235413 AGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAATGGGCC 24235354 Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488 | || || ||| ||||||| |||| ||||||||||||||||||||||||| Sbjct 24235353 AAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 24235294 Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| |||||||| ||| |||||||||||||| ||||||||||| Sbjct 24235293 CCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTA 24235238 >seq7 Length=66841537 Score = 134 bits (148), Expect = 2e-25 Identities = 149/199 (75%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || ||| ||| | |||||||||||| ||||||||||| | || ||| | Sbjct 39276366 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTCGACGTGATGG 39276425 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | ||||||| || |||||| ||||||| |||| |||| Sbjct 39276426 TCGAGCGCTTGTTATAATGCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGT 39276485 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||||||| ||| | |||| |||||||| ||| ||||| | Sbjct 39276486 CGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCGGTGTCCGGGTGGA 39276545 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 ||||||| ||||||||||| Sbjct 39276546 CCTGCTTCAGCACCTTGTA 39276564 Score = 104 bits (114), Expect = 3e-16 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | |||||||||||| ||||||||||| | | ||| | Sbjct 39749202 TGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATAG 39749143 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||| | | || ||||| || |||||| ||||||| |||| |||| Sbjct 39749142 TGCAGCGCTTGGTATAATGTGCCAGGCGCGACGCCTCGCCTGCGATGCGCTCGAAAATGT 39749083 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTG--GAGATGCCCACGTCGGGGTG 1254523 | |||||||||||||||||| ||| | ||| ||| || || || || ||||| Sbjct 39749082 CACTGACAAACGAGTTCATGATGCTCAT-GGCTT-TTGAAGATATTCCTGTATCTGGGTG 39749025 Query 1254524 CACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||| | ||||||||||||| Sbjct 39749024 AACTTGCTTCAACACCTTGTAGATG 39749000 Score = 89.7 bits (98), Expect = 6e-12 Identities = 141/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| | | || Sbjct 39427803 GCTTGGCCAGCTCCCCGGGTAGCAACAGGCGCACGGCCGTCTGGATCTCCCTGGATGTGA 39427744 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| || | | Sbjct 39427743 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAAA 39427684 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || || ||||||| ||| | ||| || ||||| || || | Sbjct 39427683 TGTCATTCACGAAGGAATTCATGATACCCATGGCCTTAGACGAAATGCCAGTATCTGGAT 39427624 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 39427623 GGACCTGCTTCAGAACCTTGTA 39427602 >seq9 Length=141945777 Score = 125 bits (138), Expect = 9e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| |||||| ||| | ||||||||| || ||||| | ||| || | ||| | Sbjct 3350892 TGGCCAACTCGCCGGGCAACAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGATGG 3350951 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | |||||||| ||||||||| |||| ||||||| | ||||||| |||| |||| Sbjct 3350952 TAGAACGCTTGTTATAGTGCGCCAAACGGGAGGCCTCGCTAGCGATGCGCTCGAAGATGT 3351011 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || ||||||||||||| ||| | |||| ||||| || ||| ||||||| Sbjct 3351012 CGTTCACGAACGAGTTCATGATGCCCATTGCCTTGGAAGAGATCCCGGTGTCCGGGTGCA 3351071 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | |||||| || Sbjct 3351072 CTTGCTTCAACACCTTATA 3351090 >seq1 Length=104504130 Score = 93.3 bits (102), Expect = 5e-13 Identities = 148/207 (71%), Gaps = 14/207 (7%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGA 1254402 |||||| |||||| ||| | ||||||||| || ||||| | ||| || |||| || Sbjct 43298797 TGGCCAACTCGCCGGGCAACAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGACGG 43298738 Query 1254403 TCGTGTTGCGCTTGTTCGAGT---GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | | |||||||| ||| || ||| |||| || |||| | ||||||| |||| Sbjct 43298737 TAGAA---CGCTTGTTGTAGTAGTGCACCAAACGGGAGGGCTCGCTAGCGATGCGCTCGA 43298681 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGA--CCGACATCGACTTGTTGGAGATGCCCACGTC 1254517 ||||| || || ||||||||||||| || ||| | |||| ||||| || |||| Sbjct 43298680 AGATGTC-TTCACGAACGAGTTCATGATGCCCACA--GCCTTGGAAGAGATACCAGCGTC 43298624 Query 1254518 GGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||| ||||| |||||| || Sbjct 43298623 CGGGTGCACTTGCTTCTACACCTTATA 43298597 >seq18 Length=152661129 Score = 87.8 bits (96), Expect = 2e-11 Identities = 134/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | ||| |||||||| ||||||| ||| || | | Sbjct 142246729 GCTTGGCCAGCTCTCCAGGCAGCAGCAGACGCACGGCCGTCTGGACCTCCCGGGACGTCA 142246670 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC---GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 ||| | || | ||||| | ||||| ||| |||||||| | | | || || | Sbjct 142246669 GTGTGGTTCG---GCCCGAGTACTGGGCCAGCCGGGCGGCCTCGCCGGCCAGCCGCTCAA 142246613 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 || ||||| |||||||||||||||| ||| | |||| ||||||||| | ||||| Sbjct 142246612 ACAGATCGTTCACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGATGTCGG 142246553 Query 1254520 GGTGCACCTG 1254529 |||| ||||| Sbjct 142246552 GGTGGACCTG 142246543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106197179503843