Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq20 143 3e-28
seq7 134 2e-25
seq9 125 9e-23
seq1 93.3 5e-13
seq18 87.8 2e-11
>seq20
Length=149338601
Score = 143 bits (158), Expect = 3e-28
Identities = 150/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407
||||| |||||| ||| | |||||||||||| ||||||||||| || | ||| ||
Sbjct 24213403 GCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTC 24213344
Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467
||||||||| | ||||||| || || ||| ||||||| |||| ||||||
Sbjct 24213343 GAGCGCTTGTTGTAATGCGCCAAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCG 24213284
Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACC 1254527
||||||||||||||||||| ||| | |||| |||||||| ||| |||||||||
Sbjct 24213283 TTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACC 24213224
Query 1254528 TGCTTGAGCACCTTGTA 1254544
||||| |||||||||||
Sbjct 24213223 TGCTTTAGCACCTTGTA 24213207
Score = 123 bits (136), Expect = 3e-22
Identities = 133/176 (76%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 1254369 AGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGCC 1254428
||||||||||| ||||||||||| || | ||| || ||||||||| | || |||
Sbjct 24235413 AGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAATGGGCC 24235354
Query 1254429 AGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACC 1254488
| || || ||| ||||||| |||| |||||||||||||||||||||||||
Sbjct 24235353 AAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 24235294
Query 1254489 GACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544
||| | |||| |||||||| ||| |||||||||||||| |||||||||||
Sbjct 24235293 CCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTA 24235238
>seq7
Length=66841537
Score = 134 bits (148), Expect = 2e-25
Identities = 149/199 (75%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
||||||| || ||| ||| | |||||||||||| ||||||||||| | || ||| |
Sbjct 39276366 TGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTCGACGTGATGG 39276425
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
| ||||||||| | ||||||| || |||||| ||||||| |||| ||||
Sbjct 39276426 TCGAGCGCTTGTTATAATGCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGT 39276485
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
||||||| || |||||||||| ||| | |||| |||||||| ||| ||||| |
Sbjct 39276486 CGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGATGAGATGCCGGTGTCCGGGTGGA 39276545
Query 1254526 CCTGCTTGAGCACCTTGTA 1254544
||||||| |||||||||||
Sbjct 39276546 CCTGCTTCAGCACCTTGTA 39276564
Score = 104 bits (114), Expect = 3e-16
Identities = 148/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
||||||| || || ||| | |||||||||||| ||||||||||| | | ||| |
Sbjct 39749202 TGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATAG 39749143
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
|| ||||||| | | || ||||| || |||||| ||||||| |||| ||||
Sbjct 39749142 TGCAGCGCTTGGTATAATGTGCCAGGCGCGACGCCTCGCCTGCGATGCGCTCGAAAATGT 39749083
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTG--GAGATGCCCACGTCGGGGTG 1254523
| |||||||||||||||||| ||| | ||| ||| || || || || |||||
Sbjct 39749082 CACTGACAAACGAGTTCATGATGCTCAT-GGCTT-TTGAAGATATTCCTGTATCTGGGTG 39749025
Query 1254524 CACCTGCTTGAGCACCTTGTAGATG 1254548
|| ||||| | |||||||||||||
Sbjct 39749024 AACTTGCTTCAACACCTTGTAGATG 39749000
Score = 89.7 bits (98), Expect = 6e-12
Identities = 141/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| | | | |||||||||||| ||||||||||| | | ||
Sbjct 39427803 GCTTGGCCAGCTCCCCGGGTAGCAACAGGCGCACGGCCGTCTGGATCTCCCTGGATGTGA 39427744
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | |||||||| || |||||| ||||||| || | |
Sbjct 39427743 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAAA 39427684
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||| || || || || ||||||| ||| | ||| || ||||| || || |
Sbjct 39427683 TGTCATTCACGAAGGAATTCATGATACCCATGGCCTTAGACGAAATGCCAGTATCTGGAT 39427624
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
| |||||||| || ||||||||
Sbjct 39427623 GGACCTGCTTCAGAACCTTGTA 39427602
>seq9
Length=141945777
Score = 125 bits (138), Expect = 9e-23
Identities = 147/199 (74%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
|||||| |||||| ||| | ||||||||| || ||||| | ||| || | ||| |
Sbjct 3350892 TGGCCAACTCGCCGGGCAACAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGATGG 3350951
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
| |||||||| ||||||||| |||| ||||||| | ||||||| |||| ||||
Sbjct 3350952 TAGAACGCTTGTTATAGTGCGCCAAACGGGAGGCCTCGCTAGCGATGCGCTCGAAGATGT 3351011
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
|||| || ||||||||||||| ||| | |||| ||||| || ||| |||||||
Sbjct 3351012 CGTTCACGAACGAGTTCATGATGCCCATTGCCTTGGAAGAGATCCCGGTGTCCGGGTGCA 3351071
Query 1254526 CCTGCTTGAGCACCTTGTA 1254544
| ||||| | |||||| ||
Sbjct 3351072 CTTGCTTCAACACCTTATA 3351090
>seq1
Length=104504130
Score = 93.3 bits (102), Expect = 5e-13
Identities = 148/207 (71%), Gaps = 14/207 (7%)
Strand=Plus/Minus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCG---CGTGCCGA 1254402
|||||| |||||| ||| | ||||||||| || ||||| | ||| || |||| ||
Sbjct 43298797 TGGCCAACTCGCCGGGCAACAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGACGG 43298738
Query 1254403 TCGTGTTGCGCTTGTTCGAGT---GCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
| | |||||||| ||| || ||| |||| || |||| | ||||||| ||||
Sbjct 43298737 TAGAA---CGCTTGTTGTAGTAGTGCACCAAACGGGAGGGCTCGCTAGCGATGCGCTCGA 43298681
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGA--CCGACATCGACTTGTTGGAGATGCCCACGTC 1254517
||||| || || ||||||||||||| || ||| | |||| ||||| || ||||
Sbjct 43298680 AGATGTC-TTCACGAACGAGTTCATGATGCCCACA--GCCTTGGAAGAGATACCAGCGTC 43298624
Query 1254518 GGGGTGCACCTGCTTGAGCACCTTGTA 1254544
|||||||| ||||| |||||| ||
Sbjct 43298623 CGGGTGCACTTGCTTCTACACCTTATA 43298597
>seq18
Length=152661129
Score = 87.8 bits (96), Expect = 2e-11
Identities = 134/190 (71%), Gaps = 6/190 (3%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || || ||| | ||| |||||||| ||||||| ||| || | |
Sbjct 142246729 GCTTGGCCAGCTCTCCAGGCAGCAGCAGACGCACGGCCGTCTGGACCTCCCGGGACGTCA 142246670
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGC---GCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459
||| | || | ||||| | ||||| ||| |||||||| | | | || || |
Sbjct 142246669 GTGTGGTTCG---GCCCGAGTACTGGGCCAGCCGGGCGGCCTCGCCGGCCAGCCGCTCAA 142246613
Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519
|| ||||| |||||||||||||||| ||| | |||| ||||||||| | |||||
Sbjct 142246612 ACAGATCGTTCACAAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGATGTCGG 142246553
Query 1254520 GGTGCACCTG 1254529
|||| |||||
Sbjct 142246552 GGTGGACCTG 142246543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106197179503843
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