Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq13 122 8e-23 seq24 116 3e-21 seq5 98.7 9e-16 seq31 95.1 1e-14 seq23 89.7 5e-13 seq11 86.0 6e-12 >seq13 Length=89791019 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 87684545 GATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAG 87684604 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || ||| || ||||||||||| || || || || || || || Sbjct 87684605 TGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCA 87684664 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || ||||||||||||||| | | ||||||| || || Sbjct 87684665 GCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAA 87684724 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCC 24942 || || || || || || || ||||||||| | || |||| || ||| |||||||| Sbjct 87684725 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGGCATCACTGAGCC 87684784 >seq24 Length=78163535 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || || || ||||| || ||| || | Sbjct 22107847 ATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCG 22107788 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 22107787 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 22107728 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || || || ||||| ||| | | |||| || || ||| Sbjct 22107727 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAAC 22107668 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||||||||| || || || || | |||||| || | || || || Sbjct 22107667 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 22107621 >seq5 Length=178027732 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 ||||||| || | | || || || || || || || || ||||| || | || | | Sbjct 42512523 TGCAGATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 42512464 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 | | |||||| ||||| |||||||| || || |||||||| ||||| || || | Sbjct 42512463 ATAGCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 42512404 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT---TCGAGAAACAT-GTCAGATTAT 24880 || | |||||||||| || || || ||||| ||| | || | || | ||| || || Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTAC 42512344 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 |||||||||||||| || || || || | |||||| || | || | |||| Sbjct 42512343 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGCTGGCG 42512292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24830 TTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAA 24889 |||||||||||||||||||||||||| ||| | | | | |||| || || ||||| || Sbjct 29064769 TTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAG 29064710 Query 24890 AAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || || |||||||| |||| ||| | ||||| Sbjct 29064709 AAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 29064669 >seq31 Length=75455120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || | || || || || || || ||||| || | Sbjct 60055369 GATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTC 60055310 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||| | ||||| || || Sbjct 60055309 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCA 60055250 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | |||||||||| || || || ||||| ||| | | || | || || Sbjct 60055249 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGTACTTTGACC---TACAA 60055193 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||| | || || || | |||||| || | |||| || Sbjct 60055192 CATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACTTTGCGGTGG 60055145 >seq23 Length=109465363 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || ||||| || || || || || || || || ||| Sbjct 83252358 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 83252417 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || || || || Sbjct 83252418 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 83252477 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||||||||| ||||||||||| ||| | | | || ||||| ||| Sbjct 83252478 CAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAAC 83252537 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || || ||||| || ||| |||| Sbjct 83252538 ATCCAGAAAGAGTCGACCCTGCACCTGGT 83252566 >seq11 Length=140388259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || | || | || || | |||||| || || | Sbjct 111014109 GATGCAGATTTTCATGAAGACCCTGACAAGGAAGTCCATCACTCCCGAAGTCAAACCCTC 111014050 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || |||||| ||||| ||||||||||| || ||||||| |||||| |||| Sbjct 111014049 AGATGCAATAGAAAATGTAAAGGCCAAGATCCAAGATAACAAAGGAATTCCTCCCAATCA 111013990 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 ||| | ||| |||||| || || || ||||| ||| Sbjct 111013989 GCAAAGACTGACCTTTGCTGGCAAGCAACTGGACGAT 111013953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449833045318120