Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq20 197 2e-44
seq7 179 6e-39
seq9 152 8e-31
seq18 131 3e-24
seq1 120 5e-21
>seq20
Length=149338601
Score = 197 bits (218), Expect = 2e-44
Identities = 190/244 (78%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || ||||||||| | ||||| |||||| |||
Sbjct 24213447 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTCGCCAGCTCGCCGGGCA 24213388
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| |||| ||| || |||||||||
Sbjct 24213387 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 24213328
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| ||| || ||| ||||||| |||| ||||||||||||||||||||||
Sbjct 24213327 GCGCCAAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 24213268
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| |||||||| ||| |||||||||||||| ||||||||||
Sbjct 24213267 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTTAGCACCTTGT 24213208
Query 1485710 AAAC 1485713
| ||
Sbjct 24213207 ACAC 24213204
Score = 143 bits (158), Expect = 4e-28
Identities = 178/244 (73%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| |||
Sbjct 24309645 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGTTCGCCGGGCA 24309586
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||||||| || ||||||||||| |||| || || |||||| ||
Sbjct 24309585 GCAGCAGGCGCACCGCCGTCTGGATCTCTCGGGAAGTAATGGTCGAGCGCTTATTGTAAT 24309526
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| || || | ||||| |||| || || ||||| || |||||||
Sbjct 24309525 GCGCCAGGCGCGACGCTTCCCCAGCAATGCGCTCGAAAATATCATTGACGAAGGAGTTCA 24309466
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | |||| |||||||| ||| || || || || || ||||| || |
Sbjct 24309465 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGATGTACTTGTTTCAGCACTTTAT 24309406
Query 1485710 AAAC 1485713
| ||
Sbjct 24309405 ACAC 24309402
Score = 125 bits (138), Expect = 1e-22
Identities = 135/179 (75%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594
||||||||||| ||||||||||| |||| ||| || ||||||||| | |||
Sbjct 24235413 AGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAATGGGCC 24235354
Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654
| ||| || ||| ||||||| |||| ||||||||||||||||||||||||||
Sbjct 24235353 AAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 24235294
Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713
||| | ||| |||||||| ||| |||||||||||||| ||||||||||| ||
Sbjct 24235293 CCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTACAC 24235235
>seq7
Length=66841537
Score = 179 bits (198), Expect = 6e-39
Identities = 186/244 (76%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| |||
Sbjct 39276324 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGCA 39276383
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| | | ||| || ||||||||||
Sbjct 39276384 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTCGACGTGATGGTCGAGCGCTTGTTATAAT 39276443
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||| ||| |||||| ||||||| |||| ||||||||||| || |||||||
Sbjct 39276444 GCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 39276503
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| |||||||| ||| ||||| |||||||| ||||||||||
Sbjct 39276504 TGATGCCCATGGCCTTGGATGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 39276563
Query 1485710 AAAC 1485713
| ||
Sbjct 39276564 ACAC 39276567
Score = 159 bits (176), Expect = 5e-33
Identities = 180/241 (75%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || |||||||| ||||||| || || |||
Sbjct 39749244 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCAGGCA 39749185
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| | || ||| ||| ||||||| ||
Sbjct 39749184 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATAGTGCAGCGCTTGGTATAAT 39749125
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| |||||||| |||||| ||||||| |||| ||||| |||||||||||||||
Sbjct 39749124 GTGCCAGGCGCGACGCCTCGCCTGCGATGCGCTCGAAAATGTCACTGACAAACGAGTTCA 39749065
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| || || || || ||||| || ||||| | ||||||||
Sbjct 39749064 TGATGCTCATGGCTTTTGAAGATATTCCTGTATCTGGGTGAACTTGCTTCAACACCTTGT 39749005
Query 1485710 A 1485710
|
Sbjct 39749004 A 39749004
Score = 132 bits (146), Expect = 8e-25
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|| ||||| |||||||| |||||||| ||||| || ||| ||||||| || ||| | |
Sbjct 39427840 TATTTGGTAACGGCCTTCGTACCCTCAGAGACAGCATGCTTGGCCAGCTCCCCGGGTAGC 39427781
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
| |||||||||||| ||||||||||| | || ||| || ||||||||| ||
Sbjct 39427780 AACAGGCGCACGGCCGTCTGGATCTCCCTGGATGTGATGGTCGAGCGCTTGTTGTAATGC 39427721
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|||||||| |||||| ||||||| || | ||||| || || || || ||||||
Sbjct 39427720 GCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAAATGTCATTCACGAAGGAATTCATG 39427661
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711
|| ||| | || || ||||| || || || |||||||| || ||||||||
Sbjct 39427660 ATACCCATGGCCTTAGACGAAATGCCAGTATCTGGATGGACCTGCTTCAGAACCTTGTAC 39427601
Query 1485712 ACA 1485714
|||
Sbjct 39427600 ACA 39427598
Score = 100 bits (110), Expect = 5e-15
Identities = 75/88 (85%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| |||
Sbjct 39312226 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGCA 39312285
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557
| |||||||||||| |||||||||||
Sbjct 39312286 GCAGCAGGCGCACGGCCGTCTGGATCTC 39312313
Score = 96.9 bits (106), Expect = 5e-14
Identities = 74/88 (84%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| | |
Sbjct 39204951 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGGA 39205010
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557
| |||||||||||| |||||||||||
Sbjct 39205011 GCAGCAGGCGCACGGCCGTCTGGATCTC 39205038
>seq9
Length=141945777
Score = 152 bits (168), Expect = 8e-31
Identities = 179/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Plus
Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531
|| ||||||||||| || ||||| || || || ||||| |||||| |||||| |||
Sbjct 3350852 TATTTGGTGACGGCTTTAGTACCTTCCGAAACAGCGTGTTTGGCCAACTCGCCGGGCAAC 3350911
Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591
| ||||||||| || ||||| | ||| |||| ||| || ||||||||| | ||
Sbjct 3350912 AGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGATGGTAGAACGCTTGTTATAGTGC 3350971
Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651
|||| ||| ||||||| | ||||||| |||| |||||||| || ||||||||||||
Sbjct 3350972 GCCAAACGGGAGGCCTCGCTAGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATG 3351031
Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711
|| ||| | ||| ||||| || ||| |||||||| ||||| | |||||| ||
Sbjct 3351032 ATGCCCATTGCCTTGGAAGAGATCCCGGTGTCCGGGTGCACTTGCTTCAACACCTTATAC 3351091
Query 1485712 AC 1485713
||
Sbjct 3351092 AC 3351093
>seq18
Length=152661129
Score = 131 bits (144), Expect = 3e-24
Identities = 168/228 (74%), Gaps = 4/228 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||| ||||||||||| ||||| || || || ||| ||||||| || || |||
Sbjct 142246768 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCTCCAGGCA 142246709
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCCGATCGTGTTGCGCTTGTTAGTG 1485588
| ||| |||||||| ||||||| ||| |||| | | | ||| || | |||
Sbjct 142246708 GCAGCAGACGCACGGCCGTCTGGACCTCCCGGGACGTCAGTGTGGTTCGGCCCG--AGTA 142246651
Query 1485589 C-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| | ||||| ||| |||||||| | | | || || | || ||||| |||||||||||
Sbjct 142246650 CTGGGCCAGCCGGGCGGCCTCGCCGGCCAGCCGCTCAAACAGATCGTTCACAAACGAGTT 142246591
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695
|||||| ||| | ||| ||||||||| | ||||||||| |||||
Sbjct 142246590 CATGATGCTCATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTG 142246543
>seq1
Length=104504130
Score = 120 bits (132), Expect = 5e-21
Identities = 177/246 (72%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 1485472 TACTTGGTGAC-GGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
|| |||||||| ||| |||||||| || || || ||||| |||||| |||||| |||
Sbjct 43298838 TATTTGGTGACTGGCTTTGGTACCTTCGGAAACAGCGTGTTTGGCCAACTCGCCGGGCAA 43298779
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT- 1485587
| ||||||||| || ||||| | ||| |||| || || |||||||| |||
Sbjct 43298778 CAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGACGGTAGAACGCTTGTTGTAGTA 43298719
Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| || ||| ||| || |||| | ||||||| |||| ||||| || || ||||||||
Sbjct 43298718 GTGCACCAAACGGGAGGGCTCGCTAGCGATGCGCTCGAAGATGTC-TTCACGAACGAGTT 43298660
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707
|||||| || | ||| ||||| || |||| |||||||| ||||| ||||||
Sbjct 43298659 CATGATGCCCACAGCCTTGGAAGAGATACCAGCGTCCGGGTGCACTTGCTTCTACACCTT 43298600
Query 1485708 GTAAAC 1485713
|| ||
Sbjct 43298599 ATACAC 43298594
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915025326414281
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |