Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq20 197 2e-44 seq7 179 6e-39 seq9 152 8e-31 seq18 131 3e-24 seq1 120 5e-21 >seq20 Length=149338601 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| | ||||| |||||| ||| Sbjct 24213447 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGCTTCGCCAGCTCGCCGGGCA 24213388 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| |||| ||| || ||||||||| Sbjct 24213387 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAAT 24213328 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| || ||| ||||||| |||| |||||||||||||||||||||| Sbjct 24213327 GCGCCAAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCA 24213268 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| |||||||||||||| |||||||||| Sbjct 24213267 TGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTTAGCACCTTGT 24213208 Query 1485710 AAAC 1485713 | || Sbjct 24213207 ACAC 24213204 Score = 143 bits (158), Expect = 4e-28 Identities = 178/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || |||||||| |||||||||||||| ||| Sbjct 24309645 TGTACTTGGTGACCGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGTTCGCCGGGCA 24309586 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||||||| || ||||||||||| |||| || || |||||| || Sbjct 24309585 GCAGCAGGCGCACCGCCGTCTGGATCTCTCGGGAAGTAATGGTCGAGCGCTTATTGTAAT 24309526 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| || || | ||||| |||| || || ||||| || ||||||| Sbjct 24309525 GCGCCAGGCGCGACGCTTCCCCAGCAATGCGCTCGAAAATATCATTGACGAAGGAGTTCA 24309466 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | |||| |||||||| ||| || || || || || ||||| || | Sbjct 24309465 TGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGATGTACTTGTTTCAGCACTTTAT 24309406 Query 1485710 AAAC 1485713 | || Sbjct 24309405 ACAC 24309402 Score = 125 bits (138), Expect = 1e-22 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 ||||||||||| ||||||||||| |||| ||| || ||||||||| | ||| Sbjct 24235413 AGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGGTCGAGCGCTTGTTGTAATGGGCC 24235354 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||| || ||| ||||||| |||| |||||||||||||||||||||||||| Sbjct 24235353 AAGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTTGACAAACGAGTTCATGATG 24235294 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| | ||| |||||||| ||| |||||||||||||| ||||||||||| || Sbjct 24235293 CCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTGCTTCAGCACCTTGTACAC 24235235 >seq7 Length=66841537 Score = 179 bits (198), Expect = 6e-39 Identities = 186/244 (76%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| ||| Sbjct 39276324 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGCA 39276383 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | | ||| || |||||||||| Sbjct 39276384 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTCGACGTGATGGTCGAGCGCTTGTTATAAT 39276443 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||| ||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 39276444 GCGCCAAGCGCGACGCCTCGCCCGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 39276503 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| ||| ||||| |||||||| |||||||||| Sbjct 39276504 TGATGCCCATGGCCTTGGATGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGT 39276563 Query 1485710 AAAC 1485713 | || Sbjct 39276564 ACAC 39276567 Score = 159 bits (176), Expect = 5e-33 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || |||||||| ||||||| || || ||| Sbjct 39749244 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCAGGCA 39749185 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||| ||||||||||| | || ||| ||| ||||||| || Sbjct 39749184 GCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATAGTGCAGCGCTTGGTATAAT 39749125 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| |||||| ||||||| |||| ||||| ||||||||||||||| Sbjct 39749124 GTGCCAGGCGCGACGCCTCGCCTGCGATGCGCTCGAAAATGTCACTGACAAACGAGTTCA 39749065 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || || || || ||||| || ||||| | |||||||| Sbjct 39749064 TGATGCTCATGGCTTTTGAAGATATTCCTGTATCTGGGTGAACTTGCTTCAACACCTTGT 39749005 Query 1485710 A 1485710 | Sbjct 39749004 A 39749004 Score = 132 bits (146), Expect = 8e-25 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||| |||||||| |||||||| ||||| || ||| ||||||| || ||| | | Sbjct 39427840 TATTTGGTAACGGCCTTCGTACCCTCAGAGACAGCATGCTTGGCCAGCTCCCCGGGTAGC 39427781 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| | || ||| || ||||||||| || Sbjct 39427780 AACAGGCGCACGGCCGTCTGGATCTCCCTGGATGTGATGGTCGAGCGCTTGTTGTAATGC 39427721 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| |||||| ||||||| || | ||||| || || || || |||||| Sbjct 39427720 GCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAAATGTCATTCACGAAGGAATTCATG 39427661 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | || || ||||| || || || |||||||| || |||||||| Sbjct 39427660 ATACCCATGGCCTTAGACGAAATGCCAGTATCTGGATGGACCTGCTTCAGAACCTTGTAC 39427601 Query 1485712 ACA 1485714 ||| Sbjct 39427600 ACA 39427598 Score = 100 bits (110), Expect = 5e-15 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| ||| Sbjct 39312226 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGCA 39312285 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| ||||||||||| Sbjct 39312286 GCAGCAGGCGCACGGCCGTCTGGATCTC 39312313 Score = 96.9 bits (106), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || || ||||| ||||||| || ||| | | Sbjct 39204951 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACCGCGTGTTTGGCCAGCTCCCCGGGGA 39205010 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | |||||||||||| ||||||||||| Sbjct 39205011 GCAGCAGGCGCACGGCCGTCTGGATCTC 39205038 >seq9 Length=141945777 Score = 152 bits (168), Expect = 8e-31 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 || ||||||||||| || ||||| || || || ||||| |||||| |||||| ||| Sbjct 3350852 TATTTGGTGACGGCTTTAGTACCTTCCGAAACAGCGTGTTTGGCCAACTCGCCGGGCAAC 3350911 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | ||||||||| || ||||| | ||| |||| ||| || ||||||||| | || Sbjct 3350912 AGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGATGGTAGAACGCTTGTTATAGTGC 3350971 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||| ||| ||||||| | ||||||| |||| |||||||| || |||||||||||| Sbjct 3350972 GCCAAACGGGAGGCCTCGCTAGCGATGCGCTCGAAGATGTCGTTCACGAACGAGTTCATG 3351031 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| ||||| || ||| |||||||| ||||| | |||||| || Sbjct 3351032 ATGCCCATTGCCTTGGAAGAGATCCCGGTGTCCGGGTGCACTTGCTTCAACACCTTATAC 3351091 Query 1485712 AC 1485713 || Sbjct 3351092 AC 3351093 >seq18 Length=152661129 Score = 131 bits (144), Expect = 3e-24 Identities = 168/228 (74%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || || || ||| ||||||| || || ||| Sbjct 142246768 TGTACTTGGTCACGGCCTTGGTGCCCTCGGACACAGCATGCTTGGCCAGCTCTCCAGGCA 142246709 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGG-TGCCGATCGTGTTGCGCTTGTTAGTG 1485588 | ||| |||||||| ||||||| ||| |||| | | | ||| || | ||| Sbjct 142246708 GCAGCAGACGCACGGCCGTCTGGACCTCCCGGGACGTCAGTGTGGTTCGGCCCG--AGTA 142246651 Query 1485589 C-GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | | ||||| ||| |||||||| | | | || || | || ||||| ||||||||||| Sbjct 142246650 CTGGGCCAGCCGGGCGGCCTCGCCGGCCAGCCGCTCAAACAGATCGTTCACAAACGAGTT 142246591 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||||| ||| | ||| ||||||||| | ||||||||| ||||| Sbjct 142246590 CATGATGCTCATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTG 142246543 >seq1 Length=104504130 Score = 120 bits (132), Expect = 5e-21 Identities = 177/246 (72%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 1485472 TACTTGGTGAC-GGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 || |||||||| ||| |||||||| || || || ||||| |||||| |||||| ||| Sbjct 43298838 TATTTGGTGACTGGCTTTGGTACCTTCGGAAACAGCGTGTTTGGCCAACTCGCCGGGCAA 43298779 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTT--AGT- 1485587 | ||||||||| || ||||| | ||| |||| || || |||||||| ||| Sbjct 43298778 CAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGACGGTAGAACGCTTGTTGTAGTA 43298719 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || ||| ||| || |||| | ||||||| |||| ||||| || || |||||||| Sbjct 43298718 GTGCACCAAACGGGAGGGCTCGCTAGCGATGCGCTCGAAGATGTC-TTCACGAACGAGTT 43298660 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| || | ||| ||||| || |||| |||||||| ||||| |||||| Sbjct 43298659 CATGATGCCCACAGCCTTGGAAGAGATACCAGCGTCCGGGTGCACTTGCTTCTACACCTT 43298600 Query 1485708 GTAAAC 1485713 || || Sbjct 43298599 ATACAC 43298594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915025326414281