Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq13 150 1e-31
seq24 100 2e-16
seq8 100 2e-16
seq23 98.7 6e-16
seq5 96.9 2e-15
seq9 87.8 1e-12
>seq13
Length=89791019
Score = 150 bits (166), Expect = 1e-31
Identities = 163/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
|| |||| ||| | |||| ||| ||||| || || ||||| || || |||| ||||
Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || ||||||||||| || |||||||| | || | |||||||||||
Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||||| |||||| || || || | ||| ||| |||||| |||| ||| ||||
Sbjct 87684637 TGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 87684580
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||| ||||| |||||||| ||||||||||||||
Sbjct 87684579 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq24
Length=78163535
Score = 100 bits (110), Expect = 2e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| ||| |||||| |||||||| ||||| || | | | ||
Sbjct 22107633 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCA 22107692
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||||||||| || || |||||||||| ||||||||| | || | || |||||
Sbjct 22107693 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 22107752
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||| | || || ||||| || | || |||
Sbjct 22107753 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 22107812
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| |||||||| || || || |||||
Sbjct 22107813 GTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847
>seq8
Length=55920303
Score = 100 bits (110), Expect = 2e-16
Identities = 154/215 (72%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGC-GCTCATC 34824
|| |||||| | | |||| ||| ||||| || || ||||| || | || || | ||
Sbjct 51506765 AGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTC 51506824
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || | || |||| || || ||| | ||||| |||| | |||||||||||
Sbjct 51506825 -TCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTC 51506883
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| |||||| || || | | ||| ||| |||||| |||| ||| |||
Sbjct 51506884 TTGGATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATG 51506941
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||| | |||||||| ||| ||||||||||
Sbjct 51506942 GTCTTGCCCATCAGGGTCTTCACAGAGATCTGCAT 51506976
>seq23
Length=109465363
Score = 98.7 bits (108), Expect = 6e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
|| ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || ||
Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870
|| ||| |||| ||||| || || ||||| ||||| || | |||||||| | ||
Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465
Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930
| || ||||| || | || || || ||| | || | ||| ||| ||| ||
Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405
Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| | || |||||||| || || |||||||| || ||||| |||||
Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358
>seq5
Length=178027732
Score = 96.9 bits (106), Expect = 2e-15
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||| ||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 29064669 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 29064728
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863
||| ||||| |||| ||||| || || ||||| ||||||| | ||||||||
Sbjct 29064729 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/218 (69%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTG---CGC 34819
|||| || || |||| ||| |||||| |||||||| ||||| || | | |
Sbjct 42512306 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCA 42512365
Query 34820 TC-ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTC 34878
|| ||| ||||||||||| || || |||||||||| ||||||||| | || | || ||
Sbjct 42512366 TCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 42512425
Query 34879 CTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938
||| || | || || || || | |||| || || || ||| || | ||
Sbjct 42512426 CTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGT 42512485
Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976
|||||||| ||||| |||||| | || || |||||||
Sbjct 42512486 GATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
>seq9
Length=141945777
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/106 (79%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931
||||||||||| | ||||| |||||| || || || | ||| ||| |||||| |
Sbjct 6065561 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 6065618
Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| ||| |||||||| ||||| |||||||| ||||||||||||||
Sbjct 6065619 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6065664
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325647235475501
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |