Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq13 150 1e-31 seq24 100 2e-16 seq8 100 2e-16 seq23 98.7 6e-16 seq5 96.9 2e-15 seq9 87.8 1e-12 >seq13 Length=89791019 Score = 150 bits (166), Expect = 1e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| ||| ||||| || || ||||| || || |||| |||| Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| || || || ||||||||||| || |||||||| | || | ||||||||||| Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || || | ||| ||| |||||| |||| ||| |||| Sbjct 87684637 TGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGG 87684580 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||||| |||||||| |||||||||||||| Sbjct 87684579 TCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq24 Length=78163535 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || || |||| ||| |||||| |||||||| ||||| || | | | || Sbjct 22107633 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCA 22107692 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || |||||||||| ||||||||| | || | || ||||| Sbjct 22107693 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 22107752 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || | |||| | || || ||||| || | || ||| Sbjct 22107753 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 22107812 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| |||||||| || || || ||||| Sbjct 22107813 GTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847 >seq8 Length=55920303 Score = 100 bits (110), Expect = 2e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGC-GCTCATC 34824 || |||||| | | |||| ||| ||||| || || ||||| || | || || | || Sbjct 51506765 AGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTC 51506824 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || | || |||| || || ||| | ||||| |||| | ||||||||||| Sbjct 51506825 -TCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTC 51506883 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | ||||| |||||| || || | | ||| ||| |||||| |||| ||| ||| Sbjct 51506884 TTGGATTTTGGCTTTGAC--ATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATG 51506941 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||| | |||||||| ||| |||||||||| Sbjct 51506942 GTCTTGCCCATCAGGGTCTTCACAGAGATCTGCAT 51506976 >seq23 Length=109465363 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| || || || Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || ||| |||| ||||| || || ||||| ||||| || | |||||||| | || Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || ||| | || | ||| ||| ||| || Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || || |||||||| || ||||| ||||| Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358 >seq5 Length=178027732 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | |||||||| ||| | ||| ||| ||||| ||||| ||||| || Sbjct 29064669 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 29064728 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||| ||||| |||| ||||| || || ||||| ||||||| | |||||||| Sbjct 29064729 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/218 (69%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTG---CGC 34819 |||| || || |||| ||| |||||| |||||||| ||||| || | | | Sbjct 42512306 CTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCA 42512365 Query 34820 TC-ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTC 34878 || ||| ||||||||||| || || |||||||||| ||||||||| | || | || || Sbjct 42512366 TCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 42512425 Query 34879 CTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGT 34938 ||| || | || || || || | |||| || || || ||| || | || Sbjct 42512426 CTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGT 42512485 Query 34939 TATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 |||||||| ||||| |||||| | || || ||||||| Sbjct 42512486 GATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 >seq9 Length=141945777 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/106 (79%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931 ||||||||||| | ||||| |||||| || || || | ||| ||| |||||| | Sbjct 6065561 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 6065618 Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| ||| |||||||| ||||| |||||||| |||||||||||||| Sbjct 6065619 CAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 6065664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325647235475501