Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq24 109 4e-19
seq31 82.4 6e-11
seq5 82.4 6e-11
>seq24
Length=78163535
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || | |||
Sbjct 22107635 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 22107694
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||||||||| || || ||||| || || || ||
Sbjct 22107695 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 22107754
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || ||||| || ||
Sbjct 22107755 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGT 22107814
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788
|| || || | ||| || || || || |||||||
Sbjct 22107815 CTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq31
Length=75455120
Score = 82.4 bits (90), Expect = 6e-11
Identities = 148/216 (69%), Gaps = 3/216 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | ||| || |||| || ||||||||||| || | | || | |||
Sbjct 60055159 CAACACAAGATGCAGAGTGGGCTCCTTTTGAATGTTGTA---GGTCAAAGTACATCTATC 60055215
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| ||||||||| || || |||| || || || ||
Sbjct 60055216 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATC 60055275
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || | ||||| |||||||| || ||
Sbjct 60055276 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATGGT 60055335
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| | || | ||| || | || |||||||| ||
Sbjct 60055336 CTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 60055371
>seq5
Length=178027732
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || |
Sbjct 29064669 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 29064728
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672
| |||||| ||| || || ||||| || ||| | ||||| || ||||| ||
Sbjct 29064729 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTC 29064781
Score = 82.4 bits (90), Expect = 6e-11
Identities = 149/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG---GTGCGAG 29629
|| ||| | |||||| ||||| || ||||||||||| || || | ||| | | |
Sbjct 42512308 CAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCATC 42512367
Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689
||| || ||||| ||||||||| | |||| ||||||||| || || ||||| || || |
Sbjct 42512368 TATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 42512427
Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749
| || || | || || ||| |||||| | || || | | || || ||||| |
Sbjct 42512428 TATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGA 42512487
Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785
| || || || || | ||| | || || |||||||
Sbjct 42512488 TGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385165307713539
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |