Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq1410 93.3 6e-14 >seq1410 Length=27214 Score = 93.3 bits (102), Expect = 6e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 172964 ATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAACATTACTTGAACCAGAT 173023 || ||||| | ||||| |||||||||||| |||||||| ||| ||| | |||| | Sbjct 9611 ATTATAAATATGGCACAAGATTTTGTAGGTTCAAATAACTTAAATTTATTGTTACCATGT 9552 Query 173024 GGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGCATCAAGGTATATTTAT 173083 ||||||||||| | |||| |||||||| || ||| |||| ||| || | ||||| | | Sbjct 9551 GGTCAGTTTGGAAGTAGAAAAGAAGGAGGAAAGGATGCAGCAGCAGCACGTTATATATTT 9492 Query 173084 ACTAAA 173089 || ||| Sbjct 9491 ACAAAA 9486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655185975511000