Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq24 154 3e-32
seq23 154 3e-32
seq31 131 3e-25
seq5 123 5e-23
seq12 116 7e-21
seq11 113 9e-20
seq4 102 2e-16
seq28 100 6e-16
>seq24
Length=78163535
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || ||||| | | | | || |||||
Sbjct 22107639 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 22107698
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || ||||||||||| |||||||| || || ||||| |||||||||||||| ||
Sbjct 22107699 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 22107758
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| || ||||||||||| || ||||| ||||| || || | ||| || |||||
Sbjct 22107759 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 22107818
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811
|| |||| ||||| || || || ||||||
Sbjct 22107819 CCCGTCAGGGTCTTCACGAAAATTTGCATT 22107848
>seq23
Length=109465363
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||| || || | |||||| || || |||||||| || || ||||||||
Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || ||||| || |||||||| || || || || || || ||
Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || || || || || || ||| | || || ||
Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||| || |||||||| |||| ||||| || || || ||||||
Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 83252357
>seq31
Length=75455120
Score = 131 bits (144), Expect = 3e-25
Identities = 122/155 (79%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| ||||| || ||||||||||| |||||||| || || ||||| | ||||||||||
Sbjct 60055214 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 60055273
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| || ||||| || ||||||||||| || ||||| || ||||| || | ||| ||
Sbjct 60055274 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 60055333
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| |||||| ||||| | || ||||||||
Sbjct 60055334 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 60055368
>seq5
Length=178027732
Score = 123 bits (136), Expect = 5e-23
Identities = 152/206 (74%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAAT---TCTACCG-TCTTCTAG 82663
|| ||||| || || || || || || || ||||| | | | || | | ||||| ||
Sbjct 42512318 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCATCTATCTTCCAG 42512377
Query 82664 TTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723
||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || ||
Sbjct 42512378 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGAT 42512437
Query 82724 CTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783
||| || ||||||||||| || |||| || | || || | ||| || ||||| ||
Sbjct 42512438 CTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTCCC 42512497
Query 82784 TGTCAACGTCTTTACAAATATCTGCA 82809
|||| ||| | || || |||||||
Sbjct 42512498 CGTCAGGGTCGTCACGAAAATCTGCA 42512523
Score = 120 bits (132), Expect = 6e-22
Identities = 137/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||| || || | |||||| || || |||||||| || || ||||||||
Sbjct 139076888 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 139076947
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || ||||||||||| || || || || || || ||
Sbjct 139076948 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 139077007
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || || || || || || ||| | || || ||
Sbjct 139077008 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 139077067
Query 82764 TCCA 82767
||||
Sbjct 139077068 TCCA 139077071
Score = 84.2 bits (92), Expect = 4e-11
Identities = 78/99 (79%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| ||||| ||||| || ||||||||||| || |||||||| || || || |||||
Sbjct 29064668 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 29064727
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGAT 82681
|| | | || ||||| || ||||| || ||||||||
Sbjct 29064728 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGAT 29064766
>seq12
Length=127780087
Score = 116 bits (128), Expect = 7e-21
Identities = 120/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| ||||| || ||||||||||| ||||||||||| | ||||| |||| ||||
Sbjct 13420396 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTTTCC 13420337
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|||| || ||||| || ||||||||||| || ||||| || | || || | |||
Sbjct 13420336 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAGAGTG 13420277
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809
|| ||||| | ||| ||||| ||||| |||||||
Sbjct 13420276 ATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240
>seq11
Length=140388259
Score = 113 bits (124), Expect = 9e-20
Identities = 152/208 (73%), Gaps = 8/208 (4%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATA---GAATTCTACCGTCTTCTAGT 82664
|| ||||| || || ||||| || || || | ||| | || |||| ||||| |||
Sbjct 76921573 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTA---TCTTCCAGT 76921517
Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724
| |||||||||| ||| |||||||| || || ||||| | |||||||||||| ||||||
Sbjct 76921516 TTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGAATC 76921457
Query 82725 TTTGCTTTTACATTTTCAATCGTAT-CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783
|| || ||| ||||||| ||| ||| || || || || | | || || || | ||
Sbjct 76921456 TTGGCCTTTGCATTTTCTATCATATCCAAGAGCTT-GACCTTGAGAGAGATGCTCATCCC 76921398
Query 82784 TGTCAACGTCTTTACAAATATCTGCATT 82811
||||| ||||| || || | |||||||
Sbjct 76921397 TGTCAGGGTCTTCACGAAAACCTGCATT 76921370
Score = 109 bits (120), Expect = 1e-18
Identities = 119/158 (75%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| || || ||||| || ||||||||| | |||||||| |||| ||||| |||||||
Sbjct 111013951 CCATCGTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATTGGGAGGAATTCCTTTG 111014010
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|||||||| ||||| || ||||||||||| || | ||| |||| ||||| |||
Sbjct 111014011 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 111014070
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| | ||||| ||||| | || ||||||||
Sbjct 111014071 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCAT 111014108
>seq4
Length=81198604
Score = 102 bits (112), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 6/228 (3%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||||| ||||| | ||| || ||||||||||| || |||||||| || || || |||||
Sbjct 5807571 ACCTCGCCTCAAGCACAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 5807512
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | ||||| || ||||| || |||||||| | || || || | || |
Sbjct 5807511 CAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGA 5807452
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
| || ||||| ||||| || || |||| || || || ||| | || || ||
Sbjct 5807451 GGTGCC------CTCTTGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCAC 5807398
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || ||||| || ||||| ||||| || || ||||||||
Sbjct 5807397 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350
>seq28
Length=82073021
Score = 100 bits (110), Expect = 6e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||||||| || || || || || ||||||||||| || || |||
Sbjct 24730125 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 24730066
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || |||| | ||||| |||||||| | || |||||||| ||
Sbjct 24730065 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTTACCTTG 24730006
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| | | ||||| ||
Sbjct 24730005 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 24729971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981682798071381
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |