Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq24 154 3e-32 seq23 154 3e-32 seq31 131 3e-25 seq5 123 5e-23 seq12 116 7e-21 seq11 113 9e-20 seq4 102 2e-16 seq28 100 6e-16 >seq24 Length=78163535 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | | || ||||| Sbjct 22107639 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCC 22107698 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || Sbjct 22107699 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 22107758 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| ||||| || || | ||| || ||||| Sbjct 22107759 ATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 22107818 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || |||| ||||| || || || |||||| Sbjct 22107819 CCCGTCAGGGTCTTCACGAAAATTTGCATT 22107848 >seq23 Length=109465363 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| || |||||||| || || || || || || || Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || || Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || |||||||| |||| ||||| || || || |||||| Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 83252357 >seq31 Length=75455120 Score = 131 bits (144), Expect = 3e-25 Identities = 122/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || ||||||||||| |||||||| || || ||||| | |||||||||| Sbjct 60055214 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 60055273 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || ||||||||||| || ||||| || ||||| || | ||| || Sbjct 60055274 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTGATG 60055333 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| |||||| ||||| | || |||||||| Sbjct 60055334 GTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 60055368 >seq5 Length=178027732 Score = 123 bits (136), Expect = 5e-23 Identities = 152/206 (74%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAAT---TCTACCG-TCTTCTAG 82663 || ||||| || || || || || || || ||||| | | | || | | ||||| || Sbjct 42512318 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATATCCATCTATCTTCCAG 42512377 Query 82664 TTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723 ||| || ||||||||||| |||||||| || || ||||| |||||||||||||| || || Sbjct 42512378 TTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGAT 42512437 Query 82724 CTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783 ||| || ||||||||||| || |||| || | || || | ||| || ||||| || Sbjct 42512438 CTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTCCC 42512497 Query 82784 TGTCAACGTCTTTACAAATATCTGCA 82809 |||| ||| | || || ||||||| Sbjct 42512498 CGTCAGGGTCGTCACGAAAATCTGCA 42512523 Score = 120 bits (132), Expect = 6e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 139076888 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 139076947 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 139076948 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 139077007 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || || || Sbjct 139077008 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 139077067 Query 82764 TCCA 82767 |||| Sbjct 139077068 TCCA 139077071 Score = 84.2 bits (92), Expect = 4e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 29064668 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 29064727 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGAT 82681 || | | || ||||| || ||||| || |||||||| Sbjct 29064728 CAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGAT 29064766 >seq12 Length=127780087 Score = 116 bits (128), Expect = 7e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| ||||||||||| | ||||| |||| |||| Sbjct 13420396 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCTTTCC 13420337 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||| || ||||| || ||||||||||| || ||||| || | || || | ||| Sbjct 13420336 TTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAGAGTG 13420277 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || ||||| | ||| ||||| ||||| ||||||| Sbjct 13420276 ATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240 >seq11 Length=140388259 Score = 113 bits (124), Expect = 9e-20 Identities = 152/208 (73%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATA---GAATTCTACCGTCTTCTAGT 82664 || ||||| || || ||||| || || || | ||| | || |||| ||||| ||| Sbjct 76921573 TGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGACATCTA---TCTTCCAGT 76921517 Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 | |||||||||| ||| |||||||| || || ||||| | |||||||||||| |||||| Sbjct 76921516 TTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTATCCTGAATC 76921457 Query 82725 TTTGCTTTTACATTTTCAATCGTAT-CATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783 || || ||| ||||||| ||| ||| || || || || | | || || || | || Sbjct 76921456 TTGGCCTTTGCATTTTCTATCATATCCAAGAGCTT-GACCTTGAGAGAGATGCTCATCCC 76921398 Query 82784 TGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| ||||| || || | ||||||| Sbjct 76921397 TGTCAGGGTCTTCACGAAAACCTGCATT 76921370 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||| || ||||||||| | |||||||| |||| ||||| ||||||| Sbjct 111013951 CCATCGTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATTGGGAGGAATTCCTTTG 111014010 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 |||||||| ||||| || ||||||||||| || | ||| |||| ||||| ||| Sbjct 111014011 TTATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTG 111014070 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| | ||||| ||||| | || |||||||| Sbjct 111014071 ATGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCAT 111014108 >seq4 Length=81198604 Score = 102 bits (112), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||| ||||| | ||| || ||||||||||| || |||||||| || || || ||||| Sbjct 5807571 ACCTCGCCTCAAGCACAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 5807512 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||||| || ||||| || |||||||| | || || || | || | Sbjct 5807511 CAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGA 5807452 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 | || ||||| ||||| || || |||| || || || ||| | || || || Sbjct 5807451 GGTGCC------CTCTTGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCAC 5807398 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 5807397 CTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 >seq28 Length=82073021 Score = 100 bits (110), Expect = 6e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 24730125 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 24730066 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || |||| | ||||| |||||||| | || |||||||| || Sbjct 24730065 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGCACCATGTTTACCTTG 24730006 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| | | ||||| || Sbjct 24730005 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 24729971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981682798071381