Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq20 109 7e-19
seq5 107 3e-18
seq30 98.7 1e-15
seq4 86.0 8e-12
>seq20
Length=149338601
Score = 109 bits (120), Expect = 7e-19
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Minus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 38367985 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 38367926
Query 8713 GATTCCCCGACGAGGAGCAG 8732
|||||||||||| |||| ||
Sbjct 38367925 GATTCCCCGACGGGGAGGAG 38367906
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 9953438 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 9953379
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 9953378 CCCCGACGGGGAG 9953366
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 38367983 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 38367924
Query 11786 TTCCCCGACGAGGAGG 11801
|||||||||| |||||
Sbjct 38367923 TTCCCCGACGGGGAGG 38367908
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 9953437 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9953378
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 9953377 CCCGACGGGGAG 9953366
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 9953366 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 9953425
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 9953426 TACTAACGAGGA 9953437
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 38367909 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 38367968
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 38367969 TACTAACGAGGA 38367980
>seq5
Length=178027732
Score = 107 bits (118), Expect = 3e-18
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 131939460 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 131939401
Query 8713 GATTCCCCGACGAGGAG 8729
|||||||||||| ||||
Sbjct 131939400 GATTCCCCGACGGGGAG 131939384
Score = 104 bits (114), Expect = 3e-17
Identities = 70/77 (91%), Gaps = 1/77 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 131939458 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 131939399
Query 11786 TTCCCCGACGAGGAGGG 11802
|||||||||| ||||||
Sbjct 131939398 TTCCCCGACGGGGAGGG 131939382
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 29084001 TCCTGGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 29083942
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 29083941 CCCGACGGGGAG 29083930
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||| |||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 29084001 TCCTGGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 29083942
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 29083941 CCCGACGGGGAGG 29083929
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 131939384 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 131939443
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 131939444 TACTAACGAGGA 131939455
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 29083930 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 29083989
Query 139413 TACTAACGAGGAT 139425
||||||| |||||
Sbjct 29083990 TACTAACCAGGAT 29084002
>seq30
Length=117797301
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||| ||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 30046642 TCCTCTTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30046583
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 30046582 CCCGACGGGGAG 30046571
Score = 96.9 bits (106), Expect = 5e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||| ||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 30046642 TCCTCTTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 30046583
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 30046582 CCCGACGGGGAGG 30046570
Score = 89.7 bits (98), Expect = 7e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 30046571 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 30046630
Query 139413 TACTAACGAGGA 139424
|||||| |||||
Sbjct 30046631 TACTAAAGAGGA 30046642
>seq4
Length=81198604
Score = 86.0 bits (94), Expect = 8e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||||| ||||||| | ||||||| ||
Sbjct 44343608 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCGCGTGGGAGACTGTGGTTCGAGTC 44343667
Query 8718 CCCGACG 8724
|||||||
Sbjct 44343668 CCCGACG 44343674
Score = 84.2 bits (92), Expect = 3e-11
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||||| ||||||| | ||||||| ||
Sbjct 44343608 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCGCGTGGGAGACTGTGGTTCGAGTC 44343667
Query 11789 CCCGACGAGGAGG 11801
||||||| | |||
Sbjct 44343668 CCCGACGGGCAGG 44343680
Score = 82.4 bits (90), Expect = 1e-10
Identities = 59/68 (87%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 139358 CGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTATACTA 139417
||||||||| ||||||| | ||||||| |||||| |||||||| | ||||||||||||
Sbjct 44343674 CGTCGGGGACTCGAACCACAGTCTCCCACGCGACAGGCGGGGATACTCACCACTATACTA 44343615
Query 139418 ACGAGGAT 139425
||||||||
Sbjct 44343614 ACGAGGAT 44343607
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652751124931760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |