Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq13 145 7e-30 seq23 123 2e-23 seq8 95.1 1e-14 seq5 91.5 1e-13 seq4 82.4 7e-11 >seq13 Length=89791019 Score = 145 bits (160), Expect = 7e-30 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| |||||||| || || ||| | | | ||||| || Sbjct 87684751 AAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCA-TCCTCCAG 87684693 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||||||| | || || ||||||||||| || |||||||| |||||||| ||| Sbjct 87684692 CTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCTTGGAT 87684633 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| ||||| ||||||| || || | ||||| ||| |||| Sbjct 87684632 -TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGC 87684574 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | ||||| || || || || |||||||| Sbjct 87684573 CCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||||||||| || |||||||| | ||| | || || ||||| ||||| Sbjct 83252555 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCC 83252496 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || || ||||||||||| || |||||| ||| Sbjct 83252495 GGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTT 83252436 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||| | ||||| |||||||||| || | |||| ||| ||||||||||| || Sbjct 83252435 CACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGT 83252376 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 83252375 CTTCACGAAGATTTGCAT 83252358 >seq8 Length=55920303 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| |||||||| || | | | | | ||| ||||| |||| Sbjct 51506779 GGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTCTCCAGCTGTGTGCC 51506838 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 | || |||| || || | ||||| || |||||||| |||||||| ||| ||| || | Sbjct 51506839 CACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTT 51506897 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| ||||||| || || | ||| | ||| ||||| |||| | Sbjct 51506898 TGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTCTTGCCCATCAGGG 51506957 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || | |||||||| Sbjct 51506958 TCTTCACAGAGATCTGCAT 51506976 >seq5 Length=178027732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || |||||||| | ||| | | | || || |||||||||| Sbjct 139076917 GGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 139076975 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| || || ||||||||||| || |||||| || Sbjct 139076976 CAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 139077035 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 | | | ||| | ||||| |||||||||| || Sbjct 139077036 TCACGTTCTCGATGGTGTCACTGGGCTCCACCTC 139077069 >seq4 Length=81198604 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 5807540 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCT 5807481 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || |||||||| || | | |||| | |||| |||||| |||| Sbjct 5807480 GCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCT-CTTG-----GATCTTGGCCTTG 5807427 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | ||| | ||||| |||||||||| || | ||||| ||| || || |||| || Sbjct 5807426 GCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTC 5807367 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 5807366 TTCACGAAGATCTGCAT 5807350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483351435157960