Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4 269 3e-67 seq31 203 4e-47 >seq4 Length=81198604 Score = 269 bits (298), Expect = 3e-67 Identities = 665/1004 (66%), Gaps = 15/1004 (1%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 66967922 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 66967981 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| || ||| | | || ||||| || | || || | Sbjct 66967982 GGTCGAAATTGTTGGCAAACAAATGGTGCACGCGC---AACATCCAGTTCAAGTCACCAG 66968038 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || | Sbjct 66968039 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 66968098 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || ||||||||||| | Sbjct 66968099 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 66968158 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||||||||| | | | | || | || || || | || | ||||| | || Sbjct 66968159 ACGTGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 66968218 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | ||||| || || || || || || | ||||||||| |||| || Sbjct 66968219 TGGCCCAGAGATAATCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGA 66968278 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 ||| | | || | || || || ||| | || | ||| || || || | Sbjct 66968279 TATTTTGGTTCTGGAGCACATACTCCACCTATTCCCTACTGACCACAAAATAGGCACTTC 66968338 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538 | ||||||| ||| | | ||| || | |||||| ||||||||| | | Sbjct 66968339 CCGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCGTGTTGGTCAGCT 66968398 Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597 |||| | ||||| | | ||| ||||||| | | ||| ||| || || | Sbjct 66968399 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATTC 66968455 Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || ||||| |||| |||| ||| ||| |||| | || || || || | Sbjct 66968456 TCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGT 66968515 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | ||||||||||| || | || ||||| | | | | Sbjct 66968516 TGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA 66968575 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 | | | || ||||| | ||||| || || ||||| || || ||||| || || |||| Sbjct 66968576 TCCTGGAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGAAGCATACA 66968635 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | |||||||||| | | |||||||||||||||| ||| || || | || || || Sbjct 66968636 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCC---CA 66968692 Query 162836 CGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | || | || | || ||| | ||| | || || || | || || | ||||| Sbjct 66968693 CAGCTGTAGCCAAAAACGATTCCTCTGATTTTGTGTCCACCTGAATACAATAGAAATTCT 66968752 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| ||||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 66968753 GAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 66968812 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012 ||||||| ||||| || ||||| |||| || ||| || | || ||| || |||| Sbjct 66968813 TAGAATATGCTATTGGAAACTCCACCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 66968872 Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 | | | | | || | ||||| || | |||||||| | |||| Sbjct 66968873 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 66968916 >seq31 Length=75455120 Score = 203 bits (224), Expect = 4e-47 Identities = 238/322 (74%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| |||||||| | | Sbjct 73576421 CAGAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 73576362 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || ||||||| |||||| ||||| || || | || || || ||| Sbjct 73576361 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 73576302 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || | Sbjct 73576301 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 73576242 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| | || ||||| || || | Sbjct 73576241 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGACTTTTTGCCATGTCACAA 73576182 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||||| | ||| ||| ||||||||||||||||||||||||||| | Sbjct 73576181 TCAAAACTTCTTGGGGATGTTGCAGAAAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCG 73576122 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | || |||| || || ||||| Sbjct 73576121 CTTTTACGTCCTGGGTCACCAC 73576100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578349002238400