Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq4 269 3e-67
seq31 203 4e-47
>seq4
Length=81198604
Score = 269 bits (298), Expect = 3e-67
Identities = 665/1004 (66%), Gaps = 15/1004 (1%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 66967922 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 66967981
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||| ||||| || |||| || ||| | | || ||||| || | || || |
Sbjct 66967982 GGTCGAAATTGTTGGCAAACAAATGGTGCACGCGC---AACATCCAGTTCAAGTCACCAG 66968038
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || |
Sbjct 66968039 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 66968098
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||| ||||| ||||| | || ||||||||||| |
Sbjct 66968099 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 66968158
Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| ||||||||||| | | | | || | || || || | || | ||||| | ||
Sbjct 66968159 ACGTGTCGTACTTATGGCTTAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATAG 66968218
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| ||||| || | ||||| || || || || || || | ||||||||| |||| ||
Sbjct 66968219 TGGCCCAGAGATAATCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGGA 66968278
Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478
||| | | || | || || || ||| | || | ||| || || || |
Sbjct 66968279 TATTTTGGTTCTGGAGCACATACTCCACCTATTCCCTACTGACCACAAAATAGGCACTTC 66968338
Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCA 162538
| ||||||| ||| | | ||| || | |||||| ||||||||| | |
Sbjct 66968339 CCGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCGTGTTGGTCAGCT 66968398
Query 162539 TTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT- 162597
|||| | ||||| | | ||| ||||||| | | ||| ||| || || |
Sbjct 66968399 TTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATTC 66968455
Query 162598 --TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
|| || ||||| |||| |||| ||| ||| |||| | || || || || |
Sbjct 66968456 TCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATTTCCAGGT 66968515
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
|||| |||| ||||| || | ||||||||||| || | || ||||| | | | |
Sbjct 66968516 TGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTCA 66968575
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
| | | || ||||| | ||||| || || ||||| || || ||||| || || ||||
Sbjct 66968576 TCCTGGAGAGGTCCTGCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCAGGAAGCATACA 66968635
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835
| |||||||||| | | |||||||||||||||| ||| || || | || || ||
Sbjct 66968636 CCACGCTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCC---CA 66968692
Query 162836 CGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTCT 162892
| || | || | || ||| | ||| | || || || | || || | |||||
Sbjct 66968693 CAGCTGTAGCCAAAAACGATTCCTCTGATTTTGTGTCCACCTGAATACAATAGAAATTCT 66968752
Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952
|||| ||||||||||||||| | || || | ||| || || || || || ||||| |
Sbjct 66968753 GAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACTA 66968812
Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTGC 163012
||||||| ||||| || ||||| |||| || ||| || | || ||| || ||||
Sbjct 66968813 TAGAATATGCTATTGGAAACTCCACCTCTTCTTTACTAAGTGGTTCTATAATATATTTGC 66968872
Query 163013 GGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
| | | | | || | ||||| || | |||||||| | ||||
Sbjct 66968873 GCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 66968916
>seq31
Length=75455120
Score = 203 bits (224), Expect = 4e-47
Identities = 238/322 (74%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || ||||| || ||||| |||||||| | |
Sbjct 73576421 CAGAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGGTATTAAAGAGGC 73576362
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| | || ||||||| |||||| ||||| || || | || || || |||
Sbjct 73576361 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 73576302
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || |
Sbjct 73576301 GTCCCAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGT 73576242
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||| | ||| ||||||||| ||||| |||||| | || ||||| || || |
Sbjct 73576241 TCTCGCTGTAGGTGATCATGTTTTCTGGGCTTACAGCCTTGACTTTTTGCCATGTCACAA 73576182
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||||| | ||| ||| ||||||||||||||||||||||||||| |
Sbjct 73576181 TCAAAACTTCTTGGGGATGTTGCAGAAAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGCG 73576122
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| || |||| || || |||||
Sbjct 73576121 CTTTTACGTCCTGGGTCACCAC 73576100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578349002238400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |