Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2050 109 1e-18 >seq2050 Length=9667 Score = 109 bits (120), Expect = 1e-18 Identities = 288/430 (67%), Gaps = 20/430 (5%) Strand=Plus/Plus Query 348667 GTAAATTTGGCATCACGTGCAAATCAAGTTTGTATCCAtttt-ttttAAGAAGACGGATA 348725 ||| || |||||| | || | ||||| ||| | | ||| | |||||| || | || Sbjct 8309 GTAGATCTGGCATAATATGTATATCAACTTTAAAACAATTCTCTTTTAATAA-ATATATT 8367 Query 348726 GCATTTTTTGTGTGTTCTACAGTATGACCTCTATTTGATAATTTCAAAATATCATTATTC 348785 || ||| ||| | ||||| ||||| ||||||||| ||||| || |||| |||||| Sbjct 8368 GCTTTTATTGAATCTTCTATTGTATGTCCTCTATTTACTAATTCTAATATATTATTATTT 8427 Query 348786 GTGTGTTGTGCACCCATTTGGAGTCTTGTACAACCGTAACTTCTGAATCGCTTTATTTCT 348845 || |||||| || | ||| | ||| ||||| || | | || ||| | ||||| Sbjct 8428 GTATGTTGTATTCCAAGTTGTACTCTAGTACATCCAAATTTCCTTAATAATTCAATTTCA 8487 Query 348846 TCTAATGTTATGGTGTCTGGTCTAGTTTCCAGAGTCAATCCAATAATTCTGATTTTTGCT 348905 | | |||| | |||||||| ||||| | || ||||| || ||||| ||| | Sbjct 8488 TTTGGATTTATTCTATCTGGTCTGGTTTCTAATGTTAATCCTATTATTCTACATTTACTT 8547 Query 348906 GTTTCATTAAGTAGCAT-TTCCTCTTCAAGAGAAAAGCGGTCTTCAC---GTTTTGAAT- 348960 |||||||||| | || ||| | ||| | | | ||| || |||| || Sbjct 8548 GTTTCATTAA-TCTTATGTTCATATTCTAATGTTCCTCTTTCTCTACAATTATTTGGATC 8606 Query 348961 ------AGAAAGCATTTGCAGC--AAAATAAATGTTTCGAATAAATTCCTTCTGATAAGG 349012 | | | ||| ||||| |||||||| | || |||||||| | |||||| Sbjct 8607 TTCTCCATATA-TATTAGCAGCATAAAATAAA--TCTCTTATAAATTCTTCTTGATAATT 8663 Query 349013 TAATGGATATTCACTCCATGTACCACCGAGTACTAGAACTTCTAATTTATCAAGTTCGTG 349072 | ||||||| |||||||||| ||||| | ||||| | ||||| |||||| | | | || Sbjct 8664 TCTTGGATATCCACTCCATGTTCCACCTAATACTATTATTTCTATTTTATCTATTACATG 8723 Query 349073 TCCCATTTTT 349082 | |||||||| Sbjct 8724 T-CCATTTTT 8732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186638249878319