Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq24 129 1e-24 seq5 107 5e-18 seq23 98.7 2e-15 >seq24 Length=78163535 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| || || ||| | ||| Sbjct 22107832 AAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGATACAATAGAAAAT 22107773 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 22107772 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 22107713 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 22107712 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 22107653 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 22107652 ACTCTTCATCTAGTGTTGAGACTTCG 22107627 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 22107627 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 22107686 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 22107687 CATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 22107730 >seq5 Length=178027732 Score = 107 bits (118), Expect = 5e-18 Identities = 114/150 (76%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 42512449 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 42512390 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGA----CTTTGGCCGATTACAACGTCCAGAAAGA 206360 || || ||||| |||||||| || ||| ||||| | || |||||| | || || || Sbjct 42512389 GCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTACAACATTCAAAAGGA 42512330 Query 206361 GTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| |||||||| ||||| ||||||||||| Sbjct 42512329 GTCCACTCTTCATCTTGTGTTGAGACTTCG 42512300 Score = 86.0 bits (94), Expect = 1e-11 Identities = 84/108 (78%), Gaps = 4/108 (4%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAG-- 204809 ||||||||||| ||||| |||||||| ||||| || || | || ||||||| ||||| Sbjct 42512300 CGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 42512359 Query 204810 --TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||| || ||||||||| ||||| || || ||||| || | ||| || Sbjct 42512360 TATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 42512407 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || ||||| || || ||| Sbjct 139077030 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGCAAG 139076971 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| ||||||||||||| || || ||| Sbjct 139076970 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 139076911 Query 206374 CTTGT 206378 || || Sbjct 139076910 CTGGT 139076906 >seq23 Length=109465363 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| |||| ||||| |||||| |||| Sbjct 83252373 AAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 83252432 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 83252433 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 83252492 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| |||||||||| | ||| | | ||||||||| ||||||||||||| Sbjct 83252493 GCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAACATCCAGAAAGAGTCG 83252552 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 83252553 ACCCTGCACCTGGT 83252566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181646984075159