Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_025963.1 Length=139981 Score E Sequences producing significant alignments: (Bits) Value seq14 91.5 1e-13 >seq14 Length=103589943 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/87 (84%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 133311 AGCTCCAGGAACGCGGTGTGTACAAGGCCATGAGCGAGTTCGACATCTTCATCAACTACA 133370 ||||||| || | ||||| ||||| |||||||| ||||| ||||||||||||||||||| Sbjct 5426126 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5426067 Query 133371 TAGAGACATATACCACCATGAA-ATGA 133396 |||| || || || || ||||| |||| Sbjct 5426066 TAGAAACCTACACGACAATGAAGATGA 5426040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 183/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 5387 TCTCTTGGCCGAAGTTGAAGAGCACCACTCCCAGGTTCCCTCGGAAGTCCGGGTCCACGA 5446 |||||| ||| || || || || || || || | || |||| | || || | || Sbjct 76501665 TCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTCATCTATGA 76501606 Query 5447 CGCCCGCTCCCACATCCACGAAGTTGTTTACCGCGAGACCGGACCTCGGCGCCACGCGAC 5506 | | ||||||||||| | ||||| ||| | || | || || | || ||||| | | Sbjct 76501605 CATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGCCACTCTTC 76501546 Query 5507 CGTAGCAGCCGTATGGCGGGTGGATCTGCAGATCGGTCAGCACTACCGCGCGCCCCATCG 5566 | ||||| || | || || ||||| | || || ||| | | | | |||||| Sbjct 76501545 CATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCACAAGCACTTTCTCCATCG 76501486 Query 5567 GCGGCAAGGTGTAGTCGTAAGCGCTGTACAGGTCGTAGCCGGCCGCCTGCTCTGACCCGC 5626 | || || ||||| || || |||||||||||||||||||| || || || | ||||| Sbjct 76501485 GTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCCGCGGCGCGCGCGGACCCCT 76501426 Query 5627 GAGTGGGGATGATGGCATTCTGCGAGAGGCGAGC 5660 |||||| |||| | || |||||| || || Sbjct 76501425 TGGTGGGGGCTGTGGCGTGCTCCGAGAGCCGGGC 76501392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447746944690440