Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1 113 1e-21 seq7 107 6e-20 seq2 107 6e-20 seq5 102 3e-18 seq21 100 9e-18 seq30 98.7 3e-17 seq9 98.7 3e-17 seq34 96.9 1e-16 seq23 91.5 5e-15 seq12 87.8 6e-14 seq4 87.8 6e-14 seq14 84.2 7e-13 seq25 80.6 8e-12 >seq1 Length=104504130 Score = 113 bits (124), Expect = 1e-21 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 102355416 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 102355475 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 102355476 CCGGGTTTCAGC 102355487 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 103081633 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 103081574 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 103081573 CCGGGTTTCGGC 103081562 Score = 102 bits (112), Expect = 3e-18 Identities = 64/69 (93%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831 ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 103091323 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCG 103091264 Query 2832 GGCTTCAGC 2840 || ||| || Sbjct 103091263 GGTTTCGGC 103091255 >seq7 Length=66841537 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 37203422 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 37203363 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 37203362 TCCCGGGTTTCGGC 37203349 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 37216823 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 37216882 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 37216883 CCGGGTTTCGGC 37216894 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 37138431 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 37138490 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 37138491 TCCCGGGTTTCGGC 37138504 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 37183296 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 37183355 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 37183356 CCGGGTTTCGGC 37183367 Score = 93.3 bits (102), Expect = 1e-15 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| |||||||| |||||||||||||| ||||||||||||||||| Sbjct 37188904 TGGCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 37188845 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 37188844 ACCCCAGGTTT 37188834 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| | ||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct 37716924 GGCTGGAATAGCTCAGTTGAGAGAGTGTTAGACTGAAGATCTAAAGGTCCGTGGTTCAGT 37716983 Query 2828 CCCGGGCTT 2836 |||||| || Sbjct 37716984 CCCGGGTTT 37716992 >seq2 Length=63256308 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 16314292 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 16314233 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 16314232 CCGGGTTTCGGC 16314221 >seq5 Length=178027732 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 28138083 TGGCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 28138024 Query 2827 CCCCGGGCTTCAGC 2840 ||| || ||| || Sbjct 28138023 TCCCAGGTTTCGGC 28138010 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 29081600 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29081541 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 29081540 CCGGGTTTCGGC 29081529 Score = 80.6 bits (88), Expect = 8e-12 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2777 AGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTT 2836 ||||||||||||||||| |||||||||||||||| |||||||||||| | || ||| || Sbjct 104541190 AGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTTGATCCTGGGTTT 104541131 Query 2837 CAGC 2840 | || Sbjct 104541130 CGGC 104541127 >seq21 Length=107358006 Score = 100 bits (110), Expect = 9e-18 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 92984049 TGGCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 92984108 Query 2827 CCCCGGGCTT 2836 ||| || || Sbjct 92984109 TCCCAGGTTT 92984118 >seq30 Length=117797301 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 89679057 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 89678998 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 89678997 CCGGGTTTCGGC 89678986 >seq9 Length=141945777 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 57334490 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 57334431 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 57334430 CCGGGTTTCGGC 57334419 >seq34 Length=181543317 Score = 96.9 bits (106), Expect = 1e-16 Identities = 61/66 (92%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 160943893 GGCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 160943952 Query 2828 CCCGGG 2833 |||||| Sbjct 160943953 CCCGGG 160943958 >seq23 Length=109465363 Score = 91.5 bits (100), Expect = 5e-15 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| | Sbjct 21851827 GCTGAAATAACTCAGTTGGGAGAGTGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCAATC 21851768 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 21851767 CCGGGTTT 21851760 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||| || |||||||||| |||||| ||||||||||||||||||| ||| |||||||| | Sbjct 9600392 GCTAAAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGATCCTTGGTTCAATC 9600333 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 9600332 CCGGGTTTCAGC 9600321 >seq12 Length=127780087 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||| | Sbjct 75999633 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGTCTGAAGAGCTAAAGGTCCCTGGTTCAATC 75999692 Query 2829 CCGGGCTT 2836 || || || Sbjct 75999693 CCAGGTTT 75999700 >seq4 Length=81198604 Score = 87.8 bits (96), Expect = 6e-14 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||||||| |||||||| ||||||||| |||| |||| ||||||||||||||||||||| Sbjct 30429884 ATGGCTGAAATAGCTCAGATGGGAGAGCGTTAGTCTGAGGATCTAAAGGTCCCTGGTTCA 30429943 Query 2826 ACCCCGGGCTT 2836 ||| || || Sbjct 30429944 GTCCCAGGTTT 30429954 >seq14 Length=103589943 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||| || ||||| |||||||| ||||||||||||||||||| | | Sbjct 94012076 GCCGAAATAGCTCAGTTGAGACAGCATCAGACTGAAAATCTAAAGGTCCCTGGTTCGATC 94012135 Query 2829 CCGGGCTTC 2837 ||||| ||| Sbjct 94012136 CCGGGTTTC 94012144 >seq25 Length=96537449 Score = 80.6 bits (88), Expect = 8e-12 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| || |||| || |||| ||||||||||||||||||||| |||||||||| Sbjct 63932700 TGGCTGAAATAACTCAACTGATAGAGTGTTAGACTGAAGATCTAAAGGTTCCTGGTTCAA 63932759 Query 2827 CCCCGGGCTTCAGC 2840 ||| || |||||| Sbjct 63932760 TCCCAGGTTTCAGC 63932773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847610057955