Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq1 113 1e-21
seq7 107 6e-20
seq2 107 6e-20
seq5 102 3e-18
seq21 100 9e-18
seq30 98.7 3e-17
seq9 98.7 3e-17
seq34 96.9 1e-16
seq23 91.5 5e-15
seq12 87.8 6e-14
seq4 87.8 6e-14
seq14 84.2 7e-13
seq25 80.6 8e-12
>seq1
Length=104504130
Score = 113 bits (124), Expect = 1e-21
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 102355416 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 102355475
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 102355476 CCGGGTTTCAGC 102355487
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 103081633 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 103081574
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 103081573 CCGGGTTTCGGC 103081562
Score = 102 bits (112), Expect = 3e-18
Identities = 64/69 (93%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 2772 GAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCG 2831
||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 103091323 GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCCG 103091264
Query 2832 GGCTTCAGC 2840
|| ||| ||
Sbjct 103091263 GGTTTCGGC 103091255
>seq7
Length=66841537
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 37203422 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 37203363
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 37203362 TCCCGGGTTTCGGC 37203349
Score = 104 bits (114), Expect = 7e-19
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 37216823 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 37216882
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 37216883 CCGGGTTTCGGC 37216894
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 37138431 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 37138490
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 37138491 TCCCGGGTTTCGGC 37138504
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 37183296 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 37183355
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 37183356 CCGGGTTTCGGC 37183367
Score = 93.3 bits (102), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825
|||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||
Sbjct 37188904 TGGCTGAAATAGCTCAGCTGGGAGAGAGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 37188845
Query 2826 ACCCCGGGCTT 2836
||||| || ||
Sbjct 37188844 ACCCCAGGTTT 37188834
Score = 84.2 bits (92), Expect = 7e-13
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||||| | ||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 37716924 GGCTGGAATAGCTCAGTTGAGAGAGTGTTAGACTGAAGATCTAAAGGTCCGTGGTTCAGT 37716983
Query 2828 CCCGGGCTT 2836
|||||| ||
Sbjct 37716984 CCCGGGTTT 37716992
>seq2
Length=63256308
Score = 107 bits (118), Expect = 6e-20
Identities = 67/72 (93%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 16314292 GCCGAAATAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 16314233
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 16314232 CCGGGTTTCGGC 16314221
>seq5
Length=178027732
Score = 102 bits (112), Expect = 3e-18
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 28138083 TGGCAGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 28138024
Query 2827 CCCCGGGCTTCAGC 2840
||| || ||| ||
Sbjct 28138023 TCCCAGGTTTCGGC 28138010
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 29081600 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 29081541
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 29081540 CCGGGTTTCGGC 29081529
Score = 80.6 bits (88), Expect = 8e-12
Identities = 56/64 (88%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 2777 AGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTT 2836
||||||||||||||||| |||||||||||||||| |||||||||||| | || ||| ||
Sbjct 104541190 AGCTCAGTTGGGAGAGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTTGATCCTGGGTTT 104541131
Query 2837 CAGC 2840
| ||
Sbjct 104541130 CGGC 104541127
>seq21
Length=107358006
Score = 100 bits (110), Expect = 9e-18
Identities = 64/70 (91%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 92984049 TGGCTGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 92984108
Query 2827 CCCCGGGCTT 2836
||| || ||
Sbjct 92984109 TCCCAGGTTT 92984118
>seq30
Length=117797301
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 89679057 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 89678998
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 89678997 CCGGGTTTCGGC 89678986
>seq9
Length=141945777
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 57334490 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 57334431
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 57334430 CCGGGTTTCGGC 57334419
>seq34
Length=181543317
Score = 96.9 bits (106), Expect = 1e-16
Identities = 61/66 (92%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
||||| | |||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 160943893 GGCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 160943952
Query 2828 CCCGGG 2833
||||||
Sbjct 160943953 CCCGGG 160943958
>seq23
Length=109465363
Score = 91.5 bits (100), Expect = 5e-15
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| || |||||||||||||| ||||| |||||||||||||||||||||||||| |
Sbjct 21851827 GCTGAAATAACTCAGTTGGGAGAGTGTTAGAGTGAAGATCTAAAGGTCCCTGGTTCAATC 21851768
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 21851767 CCGGGTTT 21851760
Score = 89.7 bits (98), Expect = 2e-14
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||| || |||||||||| |||||| ||||||||||||||||||| ||| |||||||| |
Sbjct 9600392 GCTAAAATAGCTCAGTTAGGAGAGTGTTAGACTGAAGATCTAAAGATCCTTGGTTCAATC 9600333
Query 2829 CCGGGCTTCAGC 2840
||||| ||||||
Sbjct 9600332 CCGGGTTTCAGC 9600321
>seq12
Length=127780087
Score = 87.8 bits (96), Expect = 6e-14
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||| |
Sbjct 75999633 GCTGAAATAGCTCAGTTGGGAGAGTGTTAGTCTGAAGAGCTAAAGGTCCCTGGTTCAATC 75999692
Query 2829 CCGGGCTT 2836
|| || ||
Sbjct 75999693 CCAGGTTT 75999700
>seq4
Length=81198604
Score = 87.8 bits (96), Expect = 6e-14
Identities = 62/71 (87%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
||||||||| |||||||| ||||||||| |||| |||| |||||||||||||||||||||
Sbjct 30429884 ATGGCTGAAATAGCTCAGATGGGAGAGCGTTAGTCTGAGGATCTAAAGGTCCCTGGTTCA 30429943
Query 2826 ACCCCGGGCTT 2836
||| || ||
Sbjct 30429944 GTCCCAGGTTT 30429954
>seq14
Length=103589943
Score = 84.2 bits (92), Expect = 7e-13
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||||||||||| || ||||| |||||||| ||||||||||||||||||| | |
Sbjct 94012076 GCCGAAATAGCTCAGTTGAGACAGCATCAGACTGAAAATCTAAAGGTCCCTGGTTCGATC 94012135
Query 2829 CCGGGCTTC 2837
||||| |||
Sbjct 94012136 CCGGGTTTC 94012144
>seq25
Length=96537449
Score = 80.6 bits (88), Expect = 8e-12
Identities = 62/74 (84%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||||||| || |||| || |||| ||||||||||||||||||||| ||||||||||
Sbjct 63932700 TGGCTGAAATAACTCAACTGATAGAGTGTTAGACTGAAGATCTAAAGGTTCCTGGTTCAA 63932759
Query 2827 CCCCGGGCTTCAGC 2840
||| || ||||||
Sbjct 63932760 TCCCAGGTTTCAGC 63932773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847610057955
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |