Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq31 262 5e-65 seq24 141 1e-28 seq14 138 1e-27 seq27 87.8 2e-12 >seq31 Length=75455120 Score = 262 bits (290), Expect = 5e-65 Identities = 250/320 (78%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||| | | | |||||||||||| || || || | | ||||| ||| Sbjct 73576100 GTGGTGACCCAGGACGTAAAAGCGCTGCTGAACACACCTGCTTCTTTAAGATGCTTTCTG 73576159 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | || || || ||||||| || ||||| ||| ||||| | | ||||| Sbjct 73576160 CAACATCCCCAAGAAGTTTTGATTGTGACATGGCAAAAAGTCAAGGCTGTAAGCCCAGAA 73576219 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 73576220 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 73576279 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| || || |||||||||||||| Sbjct 73576280 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 73576339 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 73576340 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 73576399 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 | ||||||||||| ||||| Sbjct 73576400 ATAGCCTGCCTCACTCTCTC 73576419 Score = 194 bits (214), Expect = 2e-44 Identities = 212/282 (75%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| || || || || |||||||| | ||| || ||||| ||||||| Sbjct 73578715 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAACATCA 73578774 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || || |||||||| ||||| | ||| ||| | |||||| | || ||||||| | Sbjct 73578775 CTTGCTCGGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCAGGGA 73578834 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| ||| | | || || | || ||||| || ||||| ||||| | Sbjct 73578835 TTGAGAACAGTACTGAGATCGTCTCACACCCCAACGGAACAACGTCTGTCACCAGCACCC 73578894 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||| Sbjct 73578895 TCCAGATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACC 73578954 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 73578955 TGGGGACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 73578996 >seq24 Length=78163535 Score = 141 bits (156), Expect = 1e-28 Identities = 532/823 (65%), Gaps = 40/823 (5%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| | | ||||||| ||||| | | |||||| Sbjct 67541734 GTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 67541675 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 67541674 AAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 67541615 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 67541614 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 67541561 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | ||| |||||||||||| | || || | || ||| |||||| Sbjct 67541560 GTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGACTGTA 67541501 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| |||| || || | || |||| Sbjct 67541500 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTCCACGC 67541441 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || ||| || | ||| || | |||| Sbjct 67541440 CGTGTTTGCCCTTCGAGCCCGTACAGTCACTTTTGGTATCGTCACTAGCATCTTCACCTG 67541381 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| ||| | | | || | || || ||| ||||| |||| ||| | | | | Sbjct 67541380 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAGAGGAGGC 67541321 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACACAGACTTT------------TGGAAGGGGG 9076 || || |||| || |||| ||| |||| | |||||| | Sbjct 67541320 TGGACAGACTATCTG-CAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGAAGCGTT 67541262 Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136 | ||| | || |||| || | ||| |||||| |||| | |||||| ||| Sbjct 67541261 TCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGGCCATCT 67541202 Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-A 9194 |||| | |||||| || || || | | |||| || || | ||| | | | Sbjct 67541201 GCTATTCAGGAATCATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAAATACAA 67541147 Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254 ||| || ||||||||| |||| ||||| | | ||| | || |||| |||||||| Sbjct 67541146 AGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACAA 67541087 Query 9255 CGTCCTGCTCATTTTACACAC--CTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCG 9312 ||| | | ||| | | || | | | || || |||| ||||||||| Sbjct 67541086 ---TCTGGTTGTCCTACTCTCTGCTTTTCAAATG-CACTTGGAGGCC-GACTGTGAA--- 67541035 Query 9313 CGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGC 9369 | | |||| | ||||| ||||| | ||||| | ||| ||||||||| ||| |||||| Sbjct 67541034 CAGAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGC 67540975 Query 9370 TGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 || ||||||||||| |||||||| || || ||||| | ||||| Sbjct 67540974 TGTGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCC 67540932 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||| | Sbjct 67654935 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCGT 67654994 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 67654995 GCAGTACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 67655054 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 67655055 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 67655087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||||||||||||||||||||| | Sbjct 67655651 TGGACCTGGCCATTCAGGTGACGGAGGTGATCGCCTACACCCACTGCTGCGTCAACCCTG 67655710 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| | ||||| ||||| | ||||| Sbjct 67655711 TAATCTATGTCTTTGTCGGCGAGAGGTTCC 67655740 >seq14 Length=103589943 Score = 138 bits (152), Expect = 1e-27 Identities = 116/145 (80%), Gaps = 12/145 (8%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 5433319 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5433378 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || || || ||||||||||| |||| Sbjct 5433379 TGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCATGTTAACT 5433426 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCT 178375 | |||||||| |||||||||||||| Sbjct 5433427 CGCTGGGGGAGAAGCTAAAGACCCT 5433451 Score = 132 bits (146), Expect = 6e-26 Identities = 130/170 (76%), Gaps = 12/170 (7%) Strand=Plus/Minus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || |||||||| |||||||||| |||||||| || ||||| ||||||||| ||||||||| Sbjct 5428429 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGG 5428370 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| ||||| ||||| || || || || || |||||||| || | Sbjct 5428369 TGATGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCACGTGA 5428322 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||| |||||||| ||||| |||||||| | || | ||| |||| ||| Sbjct 5428321 ACTCGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 5428272 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 5426126 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5426067 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||| ||||| || |||| Sbjct 5426066 TAGAAACCTACACGACAATGAAGATGA 5426040 >seq27 Length=84643473 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || ||||| || | || || ||||| Sbjct 48027925 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTTG 48027866 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | || || || | ||||||| ||| ||||| || ||||||| Sbjct 48027865 GAGAAGCCCAGGCTGTCAAGGAAGTCTCGAGACCCGTTGGCATCCCAAATTTTCACTCCC 48027806 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 48027805 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 48027773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583404276765600