Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq31 262 5e-65
seq24 141 1e-28
seq14 138 1e-27
seq27 87.8 2e-12
>seq31
Length=75455120
Score = 262 bits (290), Expect = 5e-65
Identities = 250/320 (78%), Gaps = 0/320 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||||||||||||| | | | |||||||||||| || || || | | ||||| |||
Sbjct 73576100 GTGGTGACCCAGGACGTAAAAGCGCTGCTGAACACACCTGCTTCTTTAAGATGCTTTCTG 73576159
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | | || || || ||||||| || ||||| ||| ||||| | | |||||
Sbjct 73576160 CAACATCCCCAAGAAGTTTTGATTGTGACATGGCAAAAAGTCAAGGCTGTAAGCCCAGAA 73576219
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||||| || | ||| | |||| ||||| || |||||||| || || |||||||||
Sbjct 73576220 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 73576279
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
||||||||||||||||| |||||| ||||||||||| || || ||||||||||||||
Sbjct 73576280 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 73576339
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| ||
Sbjct 73576340 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 73576399
Query 171372 GTGGCCTGCCTCACCCTCTC 171391
| ||||||||||| |||||
Sbjct 73576400 ATAGCCTGCCTCACTCTCTC 73576419
Score = 194 bits (214), Expect = 2e-44
Identities = 212/282 (75%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447
|| | || |||||||| || || || || |||||||| | ||| || ||||| |||||||
Sbjct 73578715 TCCCAGTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAACATCA 73578774
Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507
| || || |||||||| ||||| | ||| ||| | |||||| | || ||||||| |
Sbjct 73578775 CTTGCTCGGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAGGTCTCTGGGTCAGGGA 73578834
Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567
|||| ||||||| ||| | | || || | || ||||| || ||||| ||||| |
Sbjct 73578835 TTGAGAACAGTACTGAGATCGTCTCACACCCCAACGGAACAACGTCTGTCACCAGCACCC 73578894
Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627
|||| | |||||||||||||| ||| |||| ||||| || |||||||| ||| ||||
Sbjct 73578895 TCCAGATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACC 73578954
Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
|||| | ||| ||| ||| ||||||||||| | ||| ||||
Sbjct 73578955 TGGGGACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 73578996
>seq24
Length=78163535
Score = 141 bits (156), Expect = 1e-28
Identities = 532/823 (65%), Gaps = 40/823 (5%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| || |||| | | ||||||| ||||| | | ||||||
Sbjct 67541734 GTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 67541675
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| |||||||||||| || ||||||||||||| |||| ||||| ||||| || |||
Sbjct 67541674 AAAATACAAGAGGCTCCATATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 67541615
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||| | | ||||| || || || |||||||||| | || ||||| |
Sbjct 67541614 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 67541561
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | ||| |||||||||||| | || || | || ||| ||||||
Sbjct 67541560 GTGGGTTTTTGGTCACGCCATGTGTAAGTTGCTCTCTGGGCTCTATTACATGGGACTGTA 67541501
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
||| || || | || |||||||| ||||| | ||| |||| || || | || ||||
Sbjct 67541500 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTACCTGGCCATCGTCCACGC 67541441
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | ||| || | | || ||| || | ||| || | ||||
Sbjct 67541440 CGTGTTTGCCCTTCGAGCCCGTACAGTCACTTTTGGTATCGTCACTAGCATCTTCACCTG 67541381
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| ||||| ||| | | | || | || || ||| ||||| |||| ||| | | | |
Sbjct 67541380 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAATTTTTCTTTCATGAGTCCCAAGAGGAGGC 67541321
Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACACAGACTTT------------TGGAAGGGGG 9076
|| || |||| || |||| ||| |||| | |||||| |
Sbjct 67541320 TGGACAGACTATCTG-CAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGAAGCGTT 67541262
Query 9077 TTGATGTTACCAGCATGACCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCCTTCT 9136
| ||| | || |||| || | ||| |||||| |||| | |||||| |||
Sbjct 67541261 TCCATGCTCTGAGAATGAATATCCTGGGTCTCGCGCTGCCTCTGCTCGTTATGGCCATCT 67541202
Query 9137 GCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCTGC-A 9194
|||| | |||||| || || || | | |||| || || | ||| | | |
Sbjct 67541201 GCTATTCAGGAATCATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAAATACAA 67541147
Query 9195 CGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAA 9254
||| || ||||||||| |||| ||||| | | ||| | || |||| ||||||||
Sbjct 67541146 AGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACAA 67541087
Query 9255 CGTCCTGCTCATTTTACACAC--CTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCG 9312
||| | | ||| | | || | | | || || |||| |||||||||
Sbjct 67541086 ---TCTGGTTGTCCTACTCTCTGCTTTTCAAATG-CACTTGGAGGCC-GACTGTGAA--- 67541035
Query 9313 CGGCGCAG---GGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGC 9369
| | |||| | ||||| ||||| | ||||| | ||| ||||||||| ||| ||||||
Sbjct 67541034 CAGAGCAGACAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGC 67540975
Query 9370 TGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
|| ||||||||||| |||||||| || || ||||| | |||||
Sbjct 67540974 TGTGTCAACCCCGTGATCTACGCCTTCGTTGGCGAGAGGTTCC 67540932
Score = 114 bits (126), Expect = 2e-20
Identities = 117/153 (76%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||| |
Sbjct 67654935 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCGT 67654994
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||||||||||||| | |||||||| ||||| ||| ||||||||||| || |||
Sbjct 67654995 GCAGTACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 67655054
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762
||| | | | ||||| || ||||| |||||
Sbjct 67655055 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 67655087
Score = 86.0 bits (94), Expect = 7e-12
Identities = 73/90 (81%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| ||||| | |||| | ||| ||||||||| ||||||||||||||||||||| |
Sbjct 67655651 TGGACCTGGCCATTCAGGTGACGGAGGTGATCGCCTACACCCACTGCTGCGTCAACCCTG 67655710
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
| ||||| | ||||| ||||| | |||||
Sbjct 67655711 TAATCTATGTCTTTGTCGGCGAGAGGTTCC 67655740
>seq14
Length=103589943
Score = 138 bits (152), Expect = 1e-27
Identities = 116/145 (80%), Gaps = 12/145 (8%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| || ||||| ||||||||| ||||||||||||
Sbjct 5433319 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAAATGATCCAGTTTTACCTGGAGGAGGTGA 5433378
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| || || || || || ||||||||||| ||||
Sbjct 5433379 TGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCATGTTAACT 5433426
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCT 178375
| |||||||| ||||||||||||||
Sbjct 5433427 CGCTGGGGGAGAAGCTAAAGACCCT 5433451
Score = 132 bits (146), Expect = 6e-26
Identities = 130/170 (76%), Gaps = 12/170 (7%)
Strand=Plus/Minus
Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287
|| |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||
Sbjct 5428429 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGG 5428370
Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347
||||||| ||||| ||||| || || || || || |||||||| || |
Sbjct 5428369 TGATGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCACGTGA 5428322
Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
|||| |||||||| ||||| |||||||| | || | ||| |||| |||
Sbjct 5428321 ACTCGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 5428272
Score = 89.7 bits (98), Expect = 6e-13
Identities = 72/87 (83%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| | |||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 5426126 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 5426067
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
||||| | |||| ||||| || ||||
Sbjct 5426066 TAGAAACCTACACGACAATGAAGATGA 5426040
>seq27
Length=84643473
Score = 87.8 bits (96), Expect = 2e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342
|||||||| ||||||||||||||||| || ||||| || | || || |||||
Sbjct 48027925 GCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCTCTGTTG 48027866
Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402
||||||||| | | || || || | ||||||| ||| ||||| || |||||||
Sbjct 48027865 GAGAAGCCCAGGCTGTCAAGGAAGTCTCGAGACCCGTTGGCATCCCAAATTTTCACTCCC 48027806
Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435
|||| || || ||||||| || ||||| |||
Sbjct 48027805 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 48027773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583404276765600
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