Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq20 167 3e-35 seq7 143 4e-28 seq9 104 3e-16 >seq20 Length=149338601 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 24213207 TACAAGGTGCTAAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 24213260 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||| || ||| Sbjct 24213261 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCGCGC 24213320 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 24213321 TTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 24213380 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||| | ||||||||| ||||||||||||| Sbjct 24213381 CTGCTGCTGCCCGGCGAGCTGGCGAAGCACGCCGTGTCCGAGGGCACCA 24213429 Score = 113 bits (124), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| |||| || |||| ||||| Sbjct 24235238 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 24235291 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| ||| || ||| Sbjct 24235292 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCGCGC 24235351 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| | | |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 24235352 TTGGCCCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 24235411 Query 725094 CT 725095 || Sbjct 24235412 CT 24235413 Score = 111 bits (122), Expect = 2e-18 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || ||||| || || |||| ||||| | || || Sbjct 24309454 CCATGGGCATCATGAACTCCTTCGTCAATGATATTTTCGAGCGCATTGCTGGGGAAGCGT 24309513 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||||||| | ||| |||||| || || | || ||||||||||| || | Sbjct 24309514 CGCGCCTGGCGCATTACAATAAGCGCTCGACCATTACTTCCCGAGAGATCCAGACGGCGG 24309573 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||||| | ||| |||||||||||||| |||||||| ||||||||||||| Sbjct 24309574 TGCGCCTGCTGCTGCCCGGCGAACTGGCCAAACACGCCGTGTCCGAGGGCACCA 24309627 >seq7 Length=66841537 Score = 143 bits (158), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| || |||| ||||| Sbjct 39276564 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCATCCAAGGCCATG 39276511 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 39276510 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 39276451 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| | ||||||||| || ||| || | ||||||||||| ||||||||| Sbjct 39276450 TTGGCGCATTATAACAAGCGCTCGACCATCACGTCGAGGGAGATCCAGACGGCCGTGCGC 39276391 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||| || ||||||||||||| Sbjct 39276390 CTGCTGCTGCCCGGGGAGCTGGCCAAACACGCGGTGTCCGAGGGCACCA 39276342 Score = 127 bits (140), Expect = 3e-23 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || ||||| || | | ||| || || || || Sbjct 39749001 ATCTACAAGGTGTTGAAGCAAGTTCACCCAGATACAG---GAATATCTTCAAA--AG-CC 39749054 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||||||||||||| ||||| |||| ||||||| |||||| Sbjct 39749055 ATGAGCATCATGAACTCGTTTGTCAGTGACATTTTCGAGCGCATCGCAGGCGAGGCGTCG 39749114 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | | | ||||||| ||| ||| | | ||||||||||| |||||| Sbjct 39749115 CGCCTGGCACATTATACCAAGCGCTGCACTATCACGTCCAGGGAGATCCAGACGGCCGTG 39749174 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||||| | ||| || || ||||||| |||||||| ||||||||||||| Sbjct 39749175 CGCCTGCTGCTGCCTGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 39749226 Score = 102 bits (112), Expect = 1e-15 Identities = 128/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024 ||| ||||| |||||||| || || || || ||||| | || ||||||| |||| Sbjct 39427647 AAGGCCATGGGTATCATGAATTCCTTCGTGAATGACATTTTTGAGCGCATCGCGGGCGAG 39427706 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || |||||||||| | |||||||||| || ||| | | ||||||||||| Sbjct 39427707 GCGTCACGCCTGGCGCATTACAACAAGCGCTCGACCATCACATCCAGGGAGATCCAGACG 39427766 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||||||||||| | | | ||| || ||||||| ||| || ||||| ||||| || Sbjct 39427767 GCCGTGCGCCTGTTGCTACCCGGGGAGCTGGCCAAGCATGCTGTCTCTGAGGGTAC 39427822 >seq9 Length=141945777 Score = 104 bits (114), Expect = 3e-16 Identities = 160/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || |||||| | ||||| |||||||| |||| || || ||||| | | ||| Sbjct 3351090 TATAAGGTGTTGAAGCAAGTGCACCCGGACACCG---GGATCTCTTCCAA---GGCAATG 3351037 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| || |||||||| |||| ||||||| | ||||||| || Sbjct 3351036 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCTAGCGAGGCCTCCCGT 3350977 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||||| || |||||||| || ||| | || ||| | ||||| || |||||| Sbjct 3350976 TTGGCGCACTATAACAAGCGTTCTACCATCACGTCCCGGGAGGTGCAGACGGCTGTGCGC 3350917 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| |||||| |||||| ||||| || || || || || Sbjct 3350916 CTGCTGTTGCCCGGCGAGTTGGCCAAACACGCTGTTTCGGAAGGTAC 3350870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176704029351598