Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq20 167 3e-35
seq7 143 4e-28
seq9 104 3e-16
>seq20
Length=149338601
Score = 167 bits (184), Expect = 3e-35
Identities = 175/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||||||||| |||| |||| || |||| |||||
Sbjct 24213207 TACAAGGTGCTAAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 24213260
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||||||||||||||| |||| ||||||| ||| || |||
Sbjct 24213261 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCGCGC 24213320
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||||| | |||||||||| || ||| | || ||||||||||| |||||||||
Sbjct 24213321 TTGGCGCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 24213380
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||| | ||||||||| |||||||||||||
Sbjct 24213381 CTGCTGCTGCCCGGCGAGCTGGCGAAGCACGCCGTGTCCGAGGGCACCA 24213429
Score = 113 bits (124), Expect = 6e-19
Identities = 135/182 (74%), Gaps = 6/182 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||||||||| |||| |||| || |||| |||||
Sbjct 24235238 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 24235291
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||||||||||||||| |||| ||||||| ||| || |||
Sbjct 24235292 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCGCGC 24235351
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||| | | |||||||||| || ||| | || ||||||||||| |||||||||
Sbjct 24235352 TTGGCCCATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 24235411
Query 725094 CT 725095
||
Sbjct 24235412 CT 24235413
Score = 111 bits (122), Expect = 2e-18
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028
||||| ||||||||||| || ||||| || || |||| ||||| | || ||
Sbjct 24309454 CCATGGGCATCATGAACTCCTTCGTCAATGATATTTTCGAGCGCATTGCTGGGGAAGCGT 24309513
Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088
|||||||||| | ||| |||||| || || | || ||||||||||| || |
Sbjct 24309514 CGCGCCTGGCGCATTACAATAAGCGCTCGACCATTACTTCCCGAGAGATCCAGACGGCGG 24309573
Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||||| | ||| |||||||||||||| |||||||| |||||||||||||
Sbjct 24309574 TGCGCCTGCTGCTGCCCGGCGAACTGGCCAAACACGCCGTGTCCGAGGGCACCA 24309627
>seq7
Length=66841537
Score = 143 bits (158), Expect = 4e-28
Identities = 170/229 (74%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| |||||||| ||||| |||| |||| || |||| |||||
Sbjct 39276564 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCATCCAAGGCCATG 39276511
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| ||||||| |||||| |||
Sbjct 39276510 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 39276451
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||||| | ||||||||| || ||| || | ||||||||||| |||||||||
Sbjct 39276450 TTGGCGCATTATAACAAGCGCTCGACCATCACGTCGAGGGAGATCCAGACGGCCGTGCGC 39276391
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| ||| || ||||||| ||||| || |||||||||||||
Sbjct 39276390 CTGCTGCTGCCCGGGGAGCTGGCCAAACACGCGGTGTCCGAGGGCACCA 39276342
Score = 127 bits (140), Expect = 3e-23
Identities = 169/232 (73%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||||||||||| | ||||| || ||||| || | | ||| || || || ||
Sbjct 39749001 ATCTACAAGGTGTTGAAGCAAGTTCACCCAGATACAG---GAATATCTTCAAA--AG-CC 39749054
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030
||| ||||||||||||||||||| ||||| |||| ||||||| ||||||
Sbjct 39749055 ATGAGCATCATGAACTCGTTTGTCAGTGACATTTTCGAGCGCATCGCAGGCGAGGCGTCG 39749114
Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090
|||||||| | | | ||||||| ||| ||| | | ||||||||||| ||||||
Sbjct 39749115 CGCCTGGCACATTATACCAAGCGCTGCACTATCACGTCCAGGGAGATCCAGACGGCCGTG 39749174
Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
|||||| | ||| || || ||||||| |||||||| |||||||||||||
Sbjct 39749175 CGCCTGCTGCTGCCTGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGCACCA 39749226
Score = 102 bits (112), Expect = 1e-15
Identities = 128/176 (73%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 724965 AAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAG 725024
||| ||||| |||||||| || || || || ||||| | || ||||||| ||||
Sbjct 39427647 AAGGCCATGGGTATCATGAATTCCTTCGTGAATGACATTTTTGAGCGCATCGCGGGCGAG 39427706
Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084
|| |||||||||| | |||||||||| || ||| | | |||||||||||
Sbjct 39427707 GCGTCACGCCTGGCGCATTACAACAAGCGCTCGACCATCACATCCAGGGAGATCCAGACG 39427766
Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
|||||||||||| | | | ||| || ||||||| ||| || ||||| ||||| ||
Sbjct 39427767 GCCGTGCGCCTGTTGCTACCCGGGGAGCTGGCCAAGCATGCTGTCTCTGAGGGTAC 39427822
>seq9
Length=141945777
Score = 104 bits (114), Expect = 3e-16
Identities = 160/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
|| |||||| | ||||| |||||||| |||| || || ||||| | | |||
Sbjct 3351090 TATAAGGTGTTGAAGCAAGTGCACCCGGACACCG---GGATCTCTTCCAA---GGCAATG 3351037
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| || |||||||| |||| ||||||| | ||||||| ||
Sbjct 3351036 GGCATCATGAACTCGTTCGTGAACGACATCTTCGAGCGCATCGCTAGCGAGGCCTCCCGT 3350977
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
|||||| || |||||||| || ||| | || ||| | ||||| || ||||||
Sbjct 3350976 TTGGCGCACTATAACAAGCGTTCTACCATCACGTCCCGGGAGGTGCAGACGGCTGTGCGC 3350917
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
||| | ||| |||||| |||||| ||||| || || || || ||
Sbjct 3350916 CTGCTGTTGCCCGGCGAGTTGGCCAAACACGCTGTTTCGGAAGGTAC 3350870
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176704029351598
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |