Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq24 107 2e-18
seq23 87.8 2e-12
seq13 86.0 6e-12
>seq24
Length=78163535
Score = 107 bits (118), Expect = 2e-18
Identities = 158/221 (71%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||||||||||| | ||| |
Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
| || || || || ||||| ||||| |||| | ||||| || || || || |||||
Sbjct 22107690 CCA-TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 22107748
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | ||| || || | ||| || ||||||||
Sbjct 22107749 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGT 22107808
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
||||| || || || | || || ||||||||||||||||
Sbjct 22107809 GATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq23
Length=109465363
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564
|| ||||| || || || || || || |||||||| || || ||| || ||
Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507
Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624
||||||||||| ||||| || | | |||||| || || || |||||||| || || ||
Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447
Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684
|| || || || || | ||||| | ||||| || ||||| ||||| ||
Sbjct 83252446 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTG 83252387
Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| | || || ||||| ||||||||||||
Sbjct 83252386 CCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 83252354
>seq13
Length=89791019
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| || || | ||| | ||| || ||||| || || || || ||||||||
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | || || ||||||||||| || || |||| ||||||||| || || ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| || || ||||| ||||| |||||| || | ||||| | || ||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|| || || ||||| || || || | || || || || || |||||
Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505325881647080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |