Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq14 113 7e-20 seq11 91.5 2e-13 >seq14 Length=103589943 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 87015251 AGATGATTAATGGAGAGATGTATCCTCCCACAGTCAAAGATACTCAGGTCGAAATGATCT 87015310 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || ||| ||||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 87015311 ACCCACCTCATGTTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 87015369 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| |||| |||| || |||||| | || |||||||| || || || Sbjct 87015370 GTGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGAT 87015429 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 87015430 GTGCTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 87015478 >seq11 Length=140388259 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 214104 TGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACA 214163 ||||||| || | || ||| ||||| | ||||||| ||||||||| | ||||||||| Sbjct 18787175 TGTTTGGGCTGCTTCCTGGTCTCATGCTCTACGCCACCATCTGGCTGCGTGAGCACAACC 18787116 Query 214164 GGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 | || || ||| ||||||| |||||||| ||| |||||||||||| ||||||| Sbjct 18787115 GCGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGGGCGACGAACAGCTCTTCCAGA 18787056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723237009636960