Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11 129 8e-25 seq1 123 3e-23 seq14 98.7 1e-15 seq21 84.2 3e-11 >seq11 Length=140388259 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || | Sbjct 25930473 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 25930414 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 25930413 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGG 25930354 Query 39759 CAAC 39762 | || Sbjct 25930353 CTAC 25930350 >seq1 Length=104504130 Score = 123 bits (136), Expect = 3e-23 Identities = 107/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| |||||||| || ||||||||||| ||||| | || Sbjct 62745002 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 62745061 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 62745062 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 62745121 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 62745122 TTTCTTATACCAT 62745134 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| ||||| || || || | ||| || || ||||| || | Sbjct 62766485 CACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACGGCAATCCTTGCTGCCAGGA 62766544 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 | ||||||||||| || | ||||| | || || ||| | || ||||| || ||||| | Sbjct 62766545 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTATCCA 62766604 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 62766605 GTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 62766652 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || || || ||||| || |||||||| || ||| Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 |||||||||||||| | || ||||| | ||||| || | | || | ||||||| Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328 Query 70111 ATATGCTGAGGTCGTTC 70127 || ||||| |||| ||| Sbjct 62719329 ATGTGCTGTGGTCTTTC 62719345 >seq14 Length=103589943 Score = 98.7 bits (108), Expect = 1e-15 Identities = 238/356 (67%), Gaps = 7/356 (2%) Strand=Plus/Minus Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406 ||| || || ||||| ||| | || || || || |||||| | ||| ||||| | Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAACCCCTTTCAGTGTCATCTAAAACTTGAACTTCCTC 76501734 Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466 | || || ||| |||| |||| | | || ||||| || |||| ||| ||| | || | Sbjct 76501733 TATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTGAC 76501674 Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526 || ||| || ||| ||| ||| | ||| | || |||| ||| || ||||||||||| Sbjct 76501673 TTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCTTC 76501614 Query 37527 ATCGATTACTCCGCCTCCTACATCAAT---ACCTTTTAGAGACAAACCCGATCTAGGAGC 37583 ||| || || | |||| ||||| || |||| | ||| || || | |||||| Sbjct 76501613 ATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 76501554 Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643 | ||||||||| || || | | ||| |||| || ||||| | ||| || Sbjct 76501553 CACTCTTCCATAGCACCCAGAAGGAAGGGCTATCTGAATGTCAGTTTTCA-CAA-GCACT 76501496 Query 37644 TTCTCCA--GGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697 ||||||| || | | || ||||| || ||||| || | || || |||||||| Sbjct 76501495 TTCTCCATCGGTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCCGCGGC 76501440 >seq21 Length=107358006 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||||| | |||||||||||||||| ||||||||||| || |||||||| || || | Sbjct 81517114 AAAATCT---CACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 81517058 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || ||||||||| || || || | | | | || ||||||| | | ||| |||| Sbjct 81517057 TGTGAGAAATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTG 81516998 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 81516997 ATAAATCAAC 81516988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686810237173560