Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq503 102 6e-17 seq21 86.0 5e-12 >seq11 Length=140388259 Score = 111 bits (122), Expect = 1e-19 Identities = 97/118 (82%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| ||||| || ||||| ||||| || |||||||| Sbjct 25928393 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 25928451 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 25928452 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 25928509 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 25930338 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 25930397 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 25930398 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 25930457 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 25930458 ATTAGCAGAGATGA 25930471 >seq503 Length=25129 Score = 102 bits (112), Expect = 6e-17 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108 |||||| | ||||| || |||||||| | |||||||| ||| | |||| | ||||| Sbjct 16628 ATGGCACTTCCACCATGCCATTTGTTGTTCCAGTTTTATGTTGGTGATGGGAAGTTGTCA 16569 Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168 ||| || | ||||||||| |||| ||||||||||| || || ||||| || || | Sbjct 16568 TGTATGATGCACCAAAGATCATGTGATATGGGACTAGGAGTACCATTTAATATTGCA--T 16511 Query 41169 TATGCTC--TGCTCACGTATATGATTGCACACGT 41200 || ||| |||| |||||||||||||| || || Sbjct 16510 CATACTCATTGCTGACGTATATGATTGCTCATGT 16477 >seq21 Length=107358006 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 81533627 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 81533686 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 81533687 AACGAGTTTCAGAGTATCAGCG 81533708 Score = 82.4 bits (90), Expect = 6e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||||||| || || | |||||| ||| ||||||| ||| | |||||||| Sbjct 81505643 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 81505702 Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782 || || |||||||||||||| || Sbjct 81505703 TCCTTCTGGACAGCAGAAGAGGT 81505725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397400395781395