Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq11 111 1e-19
seq503 102 6e-17
seq21 86.0 5e-12
>seq11
Length=140388259
Score = 111 bits (122), Expect = 1e-19
Identities = 97/118 (82%), Gaps = 2/118 (2%)
Strand=Plus/Plus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| ||||||||||| |||||| ||||| || ||||| ||||| || ||||||||
Sbjct 25928393 CGGTTTAGCCAAGAAGTTCAGATTACC-GAAGCCCGTTGTTTCTATGGCTTCCAAATTGC 25928451
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
||| ||||| || ||||| |||||||| ||||| || || || || ||||| ||||||
Sbjct 25928452 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 25928509
Score = 98.7 bits (108), Expect = 8e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 25930338 GGAGAACGTGTGGTAGCCTTTGCCGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 25930397
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 25930398 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 25930457
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 25930458 ATTAGCAGAGATGA 25930471
>seq503
Length=25129
Score = 102 bits (112), Expect = 6e-17
Identities = 116/154 (75%), Gaps = 4/154 (3%)
Strand=Plus/Minus
Query 41049 ATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCA 41108
|||||| | ||||| || |||||||| | |||||||| ||| | |||| | |||||
Sbjct 16628 ATGGCACTTCCACCATGCCATTTGTTGTTCCAGTTTTATGTTGGTGATGGGAAGTTGTCA 16569
Query 41109 TGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGT 41168
||| || | ||||||||| |||| ||||||||||| || || ||||| || || |
Sbjct 16568 TGTATGATGCACCAAAGATCATGTGATATGGGACTAGGAGTACCATTTAATATTGCA--T 16511
Query 41169 TATGCTC--TGCTCACGTATATGATTGCACACGT 41200
|| ||| |||| |||||||||||||| || ||
Sbjct 16510 CATACTCATTGCTGACGTATATGATTGCTCATGT 16477
>seq21
Length=107358006
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| |
Sbjct 81533627 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 81533686
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| ||| ||||||||
Sbjct 81533687 AACGAGTTTCAGAGTATCAGCG 81533708
Score = 82.4 bits (90), Expect = 6e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||||||| || || | |||||| ||| ||||||| ||| | ||||||||
Sbjct 81505643 TTTGTCATCTTTCCAATCCAGTACCCTGACATTTGGAAAATGTATAAACAGGCACAGGCA 81505702
Query 43760 TCATTTTGGACAGCAGAAGAAGT 43782
|| || |||||||||||||| ||
Sbjct 81505703 TCCTTCTGGACAGCAGAAGAGGT 81505725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397400395781395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |