Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq32 104 3e-17
seq5 98.7 1e-15
seq11 82.4 8e-11
>seq32
Length=60010529
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||| ||||||| |||||||||||| ||||| ||| ||| || || || || ||
Sbjct 53131690 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 53131631
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
||| | |||| | | ||| | ||||||| ||||||||||| ||||||||||| |||
Sbjct 53131630 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 53131571
Query 117425 ATCGT 117429
|| ||
Sbjct 53131570 ATAGT 53131566
Score = 91.5 bits (100), Expect = 2e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
||||| || || || | ||| || ||||| ||||| || ||||| |||||||||||
Sbjct 53131690 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCCCCATGAAGCCGAGTTCCAAACTGA 53131631
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| |||| || | ||||| ||||||| ||||| || ||||||||||| ||||||
Sbjct 53131630 CCAATAGGCTGAAGCAAGTTGATGTTGTTGCTCCCCACAAAGTTCTGAGCCAAGTTCACA 53131571
Query 152149 ATCGT 152153
|| ||
Sbjct 53131570 ATAGT 53131566
>seq5
Length=178027732
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/126 (79%), Gaps = 2/126 (2%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363
||||| ||||| |||| || |||| |||||||||||| |||| | ||||| || ||
Sbjct 150007814 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAA-CCTGGTACCAAACTG 150007872
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | |||| ||| |||||||| || ||| |||||||||||| |||||||| ||||
Sbjct 150007873 ACCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGAT 150007932
Query 117424 AATCGT 117429
||| ||
Sbjct 150007933 AATGGT 150007938
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | || || | ||||||||||| || || || ||||||||
Sbjct 150007814 GTGAAGATGTATCGAGGACTAGCAGAGTCCTTGCCACCATGCAACCTGGTACCAAACTGA 150007873
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
||| ||||| | ||||| || || ||| |||||| || |||||||||||||| | |
Sbjct 150007874 CCAATGGGCTGCAAAAGGTTCAGATTATTGCTGCCCACAAAGTTCTGAGCCAAATTGATA 150007933
Query 152149 ATCGT 152153
|| ||
Sbjct 150007934 ATGGT 150007938
>seq11
Length=140388259
Score = 82.4 bits (90), Expect = 8e-11
Identities = 96/130 (74%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | ||||||||||| ||||| || |||||
Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| || || | || ||||| |||||||||||||| || ||||||||
Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 25930352
Query 74892 ACAAGGCGTT 74901
|| | ||||
Sbjct 25930351 ACCACACGTT 25930342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547137481344200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |