Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq24 168 8e-37
seq13 158 1e-33
seq5 149 7e-31
seq31 132 5e-26
seq23 132 5e-26
seq12 118 1e-21
seq8 109 6e-19
seq11 96.9 4e-15
seq33 89.7 6e-13
seq9 89.7 6e-13
seq32 82.4 9e-11
>seq24
Length=78163535
Score = 168 bits (186), Expect = 8e-37
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| || || || ||||| || ||||| ||||| || |
Sbjct 22107848 AATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 22107789
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| || | |||| | ||||| || || ||||| ||||| ||||||||||| |||||
Sbjct 22107788 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 22107729
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| | || || |||||||| |||||||| || |||| |||| | | ||||| ||
Sbjct 22107728 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 22107669
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||||||||||||||| ||| | ||||| |||||
Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 22107621
>seq13
Length=89791019
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | || || ||||| || ||||||||||| || || || ||||||
Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || || || || || || ||||||| || || || ||||||| |||
Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || ||||| || || | || | ||||| || || ||
Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGG 87684772
>seq5
Length=178027732
Score = 149 bits (164), Expect = 7e-31
Identities = 172/230 (75%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
|||| || || || | ||| || || || ||||| || ||||| ||||| || | |
Sbjct 42512523 TGCAGATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 42512464
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
||||||| | |||| | ||||| || || ||||| ||||| ||||||||||| |||||||
Sbjct 42512463 ATAGCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 42512404
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCG---TACCCTAGCAGACTAT 27582
| | || || |||||||| |||||||| || ||| ||| | ||| | | |||||
Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTAC 42512344
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| | |||||||| |||||||||||||| || ||| | ||||| | |||
Sbjct 42512343 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGCTGG 42512294
>seq31
Length=75455120
Score = 132 bits (146), Expect = 5e-26
Identities = 168/228 (74%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || | ||||| || || | ||||| || ||||||||||| ||| |
Sbjct 60055368 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCG 60055309
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | |||| | ||||| || || ||||| ||||| ||| ||||||| ||||||
Sbjct 60055308 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAG 60055249
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCGTACCCTAGCAGACTATAA 27584
|| | || || |||||||| |||||||| || ||| ||| |||| | | ||| ||
Sbjct 60055248 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGAT-GTACTTTGAC---CTACAA 60055193
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| ||||||| ||||| || ||| | ||| |||||||
Sbjct 60055192 CATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACTTTGCGGTGG 60055145
>seq23
Length=109465363
Score = 132 bits (146), Expect = 5e-26
Identities = 166/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| || ||||| || ||||||||||| || ||||| ||||| ||| | |
Sbjct 83252357 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 83252416
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | || ||||||| || || ||||| ||||| || ||||| || |||||
Sbjct 83252417 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 83252476
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || ||||| || || || || || |||| | || || | || || ||
Sbjct 83252477 GCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAA 83252536
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || || ||| | ||| | | |||||
Sbjct 83252537 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTGTGAGGGGTGG 83252584
>seq12
Length=127780087
Score = 118 bits (130), Expect = 1e-21
Identities = 162/226 (72%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
|||| || ||||| ||||| || | | ||||| || ||||| ||||| || | |
Sbjct 13420240 TGCAGATTTTTGTGAAGACCCTGATGGAGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 13420299
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
||| || | |||| | ||||| || || ||| | ||||| |||||||||| | ||| |
Sbjct 13420300 ATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGGCCAAC 13420359
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586
| | || || |||||||| |||||||| || |||| | ||| | ||||| |
Sbjct 13420360 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTT----GACTACAGCA 13420415
Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| |||||||| |||| |||||||||||| ||| | ||| | |||||
Sbjct 13420416 TTCAAAAGGAGTCCATTCTTCATCTAGTGTTGAGACTTTGTGGTGG 13420461
>seq8
Length=55920303
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||| ||| ||||| || | |||||||| ||||| |||||||| ||| | ||
Sbjct 51506976 ATGCAGATCTCTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCAGT 51506917
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || || ||| | || || ||||| || ||||||||||| || || || |||||
Sbjct 51506916 GACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAA 51506857
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
| ||||||||||| | || | || || ||| | | | | | ||||||| |||
Sbjct 51506856 CCACGTCTAATTTTCGTGGGCACACAGCTGGAGAAGGGCTGCGCTCCGTCAGACTACAAT 51506797
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| || | || || | |||||
Sbjct 51506796 ATCCAGAAAGAGTCCACCCTGCGCCTGGTGCTTCGTCT 51506759
>seq11
Length=140388259
Score = 96.9 bits (106), Expect = 4e-15
Identities = 154/216 (71%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAG 27463
|||||| | || || ||||| || || || | || || |||| |||| || ||
Sbjct 76921370 AATGCAGGTTTTCGTGAAGACCCTGACAGGGATGAGCATCTCTCTCAAGGTCAAGCTCTT 76921429
Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523
| |||| || | |||| ||||| || |||||||| ||||| ||| ||||||| ||||
Sbjct 76921430 G-GATATGATAGAAAATGCAAAGGCCAAGATTCAGGATAAGGAAGGAGTTCCTCCTGACC 76921488
Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCGTACCCTAGCAGACTAT 27582
|||| | || || ||||||| ||| |||| || ||| ||| || | | | ||||
Sbjct 76921489 AGCAAAGACTGATCATTGCTGGAAAGAAACTGGAAGATAGAT-GTCCTTTGTCTAACTAC 76921547
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| |||||||||||||| || |||
Sbjct 76921548 AACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTG 76921583
>seq33
Length=121428352
Score = 89.7 bits (98), Expect = 6e-13
Identities = 116/158 (73%), Gaps = 3/158 (2%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||||||||| || | || ||| |||||| ||||| || ||||| |||| |
Sbjct 51188497 AATGCAAATCTTTGTGAAAA--CTGACCAGCAAGATCATTACCCTGGAGGTGGAGTGCAG 51188440
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| ||| ||||||| || | |||| ||||| || | ||| || |||||
Sbjct 51188439 TGACATCATCAAGAATGTGAAGGCCAAGGTACAGGGTAAGGAAGGCA-TCCCCCTGACCA 51188381
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
|||| | || |||| ||| || ||||| | || ||||
Sbjct 51188380 GCAGAGACTCATTTCTGCAGGCAAGCAGTTGGAAGATG 51188343
>seq9
Length=141945777
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | ||
Sbjct 6065664 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 6065605
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | ||||| ||| | || || ||||| || |||||||||||
Sbjct 6065604 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 6065561
>seq32
Length=60010529
Score = 82.4 bits (90), Expect = 9e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|| ||||| ||| | |||||||||||||| || || ||| | ||||| || ||||
Sbjct 53131566 ACTATTGTGAACTTGGCTCAGAACTTTGTGGGGAGCAACAACATCAACTTGCTTCAGCCT 53131625
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| || ||||| || ||||| |||||||| ||| | ||||| ||
Sbjct 53131626 ATTGGTCAGTTTGGAACTCGGCTTCATGGGGGCAAAGATGCTGCAAGCCCTCGTTATATT 53131685
Query 32245 TTCAC 32249
|||||
Sbjct 53131686 TTCAC 53131690
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570228567586480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |