Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq24 168 8e-37 seq13 158 1e-33 seq5 149 7e-31 seq31 132 5e-26 seq23 132 5e-26 seq12 118 1e-21 seq8 109 6e-19 seq11 96.9 4e-15 seq33 89.7 6e-13 seq9 89.7 6e-13 seq32 82.4 9e-11 >seq24 Length=78163535 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || ||||| || || || ||||| || ||||| ||||| || | Sbjct 22107848 AATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 22107789 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | ||||| || || ||||| ||||| ||||||||||| ||||| Sbjct 22107788 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 22107729 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || |||||||| |||||||| || |||| |||| | | ||||| || Sbjct 22107728 GCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAA 22107669 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||||||||||||| ||| | ||||| ||||| Sbjct 22107668 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGG 22107621 >seq13 Length=89791019 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || ||||| || ||||||||||| || || || |||||| Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCACCTGACCAG 87684665 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || || || || ||||||| || || || ||||||| ||| Sbjct 87684666 CAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAAT 87684725 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || || || Sbjct 87684726 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGG 87684772 >seq5 Length=178027732 Score = 149 bits (164), Expect = 7e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || || || | ||| || || || ||||| || ||||| ||||| || | | Sbjct 42512523 TGCAGATTTTCGTGACGACCCTGACGGGGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 42512464 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||||||| | |||| | ||||| || || ||||| ||||| ||||||||||| ||||||| Sbjct 42512463 ATAGCATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGC 42512404 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCG---TACCCTAGCAGACTAT 27582 | | || || |||||||| |||||||| || ||| ||| | ||| | | ||||| Sbjct 42512403 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGGATATACTTTGTCTGACTAC 42512344 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||||| |||||||||||||| || ||| | ||||| | ||| Sbjct 42512343 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTTCGTGCTGG 42512294 >seq31 Length=75455120 Score = 132 bits (146), Expect = 5e-26 Identities = 168/228 (74%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || | ||||| || || | ||||| || ||||||||||| ||| | Sbjct 60055368 ATGCAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCG 60055309 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | ||||| || || ||||| ||||| ||| ||||||| |||||| Sbjct 60055308 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAG 60055249 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCGTACCCTAGCAGACTATAA 27584 || | || || |||||||| |||||||| || ||| ||| |||| | | ||| || Sbjct 60055248 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGAT-GTACTTTGAC---CTACAA 60055193 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||||| ||||| || ||| | ||| ||||||| Sbjct 60055192 CATTCAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACTTTGCGGTGG 60055145 >seq23 Length=109465363 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || ||||| || ||||||||||| || ||||| ||||| ||| | | Sbjct 83252357 AATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 83252416 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| ||||| || ||||| || ||||| Sbjct 83252417 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 83252476 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| | || || | || || || Sbjct 83252477 GCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTACAA 83252536 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || ||| | ||| | | ||||| Sbjct 83252537 CATCCAGAAAGAGTCGACCCTGCACCTGGTCCTTCGTGTGAGGGGTGG 83252584 >seq12 Length=127780087 Score = 118 bits (130), Expect = 1e-21 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| || ||||| ||||| || | | ||||| || ||||| ||||| || | | Sbjct 13420240 TGCAGATTTTTGTGAAGACCCTGATGGAGAAGACCATCACTCTCGAGGTCAAGCCCTCGG 13420299 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 ||| || | |||| | ||||| || || ||| | ||||| |||||||||| | ||| | Sbjct 13420300 ATACAATAGAAAATGTAAAGGCCAAGATCCAGAATAAGGAAAGAATTCCTCCTGGCCAAC 13420359 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 | | || || |||||||| |||||||| || |||| | ||| | ||||| | Sbjct 13420360 AAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACATACTTT----GACTACAGCA 13420415 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| |||| |||||||||||| ||| | ||| | ||||| Sbjct 13420416 TTCAAAAGGAGTCCATTCTTCATCTAGTGTTGAGACTTTGTGGTGG 13420461 >seq8 Length=55920303 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||| ||| ||||| || | |||||||| ||||| |||||||| ||| | || Sbjct 51506976 ATGCAGATCTCTGTGAAGACCCTGATGGGCAAGACCATTACCCTTGAGGTCGAGCCCAGT 51506917 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || || ||||| || ||||||||||| || || || ||||| Sbjct 51506916 GACACCACTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCGCCTGACCAA 51506857 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | ||||||||||| | || | || || ||| | | | | | ||||||| ||| Sbjct 51506856 CCACGTCTAATTTTCGTGGGCACACAGCTGGAGAAGGGCTGCGCTCCGTCAGACTACAAT 51506797 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || | || || | ||||| Sbjct 51506796 ATCCAGAAAGAGTCCACCCTGCGCCTGGTGCTTCGTCT 51506759 >seq11 Length=140388259 Score = 96.9 bits (106), Expect = 4e-15 Identities = 154/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAG-TCAG 27463 |||||| | || || ||||| || || || | || || |||| |||| || || Sbjct 76921370 AATGCAGGTTTTCGTGAAGACCCTGACAGGGATGAGCATCTCTCTCAAGGTCAAGCTCTT 76921429 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 | |||| || | |||| ||||| || |||||||| ||||| ||| ||||||| |||| Sbjct 76921430 G-GATATGATAGAAAATGCAAAGGCCAAGATTCAGGATAAGGAAGGAGTTCCTCCTGACC 76921488 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT-GATCGTACCCTAGCAGACTAT 27582 |||| | || || ||||||| ||| |||| || ||| ||| || | | | |||| Sbjct 76921489 AGCAAAGACTGATCATTGCTGGAAAGAAACTGGAAGATAGAT-GTCCTTTGTCTAACTAC 76921547 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || ||||| |||||||||||||| || ||| Sbjct 76921548 AACATTCAGAAGGAGTCCACTCTTCATCTTGTGTTG 76921583 >seq33 Length=121428352 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || | || ||| |||||| ||||| || ||||| |||| | Sbjct 51188497 AATGCAAATCTTTGTGAAAA--CTGACCAGCAAGATCATTACCCTGGAGGTGGAGTGCAG 51188440 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| ||| ||||||| || | |||| ||||| || | ||| || ||||| Sbjct 51188439 TGACATCATCAAGAATGTGAAGGCCAAGGTACAGGGTAAGGAAGGCA-TCCCCCTGACCA 51188381 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | || |||| ||| || ||||| | || |||| Sbjct 51188380 GCAGAGACTCATTTCTGCAGGCAAGCAGTTGGAAGATG 51188343 >seq9 Length=141945777 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||| ||| | || Sbjct 6065664 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 6065605 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||||| ||| | || || ||||| || ||||||||||| Sbjct 6065604 GACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 6065561 >seq32 Length=60010529 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| ||| | |||||||||||||| || || ||| | ||||| || |||| Sbjct 53131566 ACTATTGTGAACTTGGCTCAGAACTTTGTGGGGAGCAACAACATCAACTTGCTTCAGCCT 53131625 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| || ||||| |||||||| ||| | ||||| || Sbjct 53131626 ATTGGTCAGTTTGGAACTCGGCTTCATGGGGGCAAAGATGCTGCAAGCCCTCGTTATATT 53131685 Query 32245 TTCAC 32249 ||||| Sbjct 53131686 TTCAC 53131690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570228567586480