Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq4 136 5e-27
seq12 86.0 8e-12
>seq4
Length=81198604
Score = 136 bits (150), Expect = 5e-27
Identities = 565/885 (64%), Gaps = 45/885 (5%)
Strand=Plus/Minus
Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742
|||||||| |||||||| || || || || || ||| | || ||||| || || ||| |
Sbjct 66968843 GAAGAGGTGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 66968784
Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802
|| | |||||||||||||||||| || ||||| |||| || | || |||||| |
Sbjct 66968783 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATTCAGGTGGACACA 66968724
Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTC-GGCCATCGCCAGGTGCTTCCCTAACGT 13861
|| || | || ||| | | | || || ||| || |||||| ||| ||
Sbjct 66968723 AAATCAGAGGAATCGTTTTTG-GCTACAGCTGTGGGCATGGCATCCTGCTTCAGTAATGT 66968665
Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921
| ||| | |||| | ||||||||| | |||||||| || || ||||| ||
Sbjct 66968664 CTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCTTCCTGGAGCCGGGTTCAGGCTGA 66968605
Query 13922 CCTCAGCTGCATGTCGGACCT-----GGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976
||| | ||||||| |||||| ||| | | | | |||| ||||||| |
Sbjct 66968604 CCTTAACTGCATGCAGGACCTCTCCAGGATGAATGCAG-----ACTGGAAGTACCTGATA 66968550
Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036
|| || ||||| ||||| || || | || ||||||||||| || || || ||| |||
Sbjct 66968549 AATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAG 66968490
Query 14037 GCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA--------GC 14088
|| || ||||| ||| || | ||| | ||||| ||| || |
Sbjct 66968489 TTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGG 66968430
Query 14089 TGCACC--GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145
|| | |||| | |||| |||| ||| ||| || |||||| |
Sbjct 66968429 TGGAAAAAGCATTATGAAGT----CGTGAATGGAAAGC----------TGACCAACACGG 66968384
Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205
| | |||| | || || || | || | ||| |||||| || || ||||
Sbjct 66968383 GAACTGACAAAATACATCCACCTCTTGAAACACCTCTGTTTTCGGGAAGTGCCTATTTTG 66968324
Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265
||||| |||| | ||||| | || ||| || || | | | | |||
Sbjct 66968323 TGGTCAGTAGGGAATAGGTGGAGTATGTGCTCCAGAACCAAAATATCCAAAAGTTTATGG 66968264
Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325
| ||| | | ||||| |||||||| ||||| | || |||||||| | ||||| ||
Sbjct 66968263 AGTGGGCCAAAGACACATACAGCCCTGACGATTATCTCTGGGCCACTATTCAGAGGATCC 66968204
Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGG 14381
|| | ||| ||| || | || | | | || |||||||||| || |||||| |
Sbjct 66968203 CCGA-AGTCCCAGGG---TCACTGTCCTTAAGCCATAAGTACGACACGTCTGACATGCAG 66968148
Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441
|| | | |||||| || || ||||| |||| || || || | || || ||||
Sbjct 66968147 GCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCC 66968088
Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTG 14501
|||||||| |||| |||| ||||||| | | || | ||| | ||||| | || ||| ||
Sbjct 66968087 TACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACTTG 66968028
Query 14502 AAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
|| ||| || | |||| | || |||| |||||||| ||||||
Sbjct 66968027 AACTGGATGTTGCGCGTGCACCATTTGTTTGCCAACAATTTCGAC 66967983
>seq12
Length=127780087
Score = 86.0 bits (94), Expect = 8e-12
Identities = 186/275 (68%), Gaps = 10/275 (4%)
Strand=Plus/Plus
Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG--GGACGC 14334
||||| || ||||| || || ||||| ||||||||| | ||| | || || ||| ||
Sbjct 67982649 GACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACCATGGATGC 67982706
Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394
| || | ||| ||| |||||| ||| ||| |||||| |||| | ||||
Sbjct 67982707 CTGGCTCTGTTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 67982766
Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454
| ||||||||||| || ||||||| ||| ||| | ||||| | || | ||||||
Sbjct 67982767 TGGTCAAGTGGCAGGACCACGAGGGAGATGTCAGCATGGGGGCACCTTATGCACCTTGCT 67982826
Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGA 14511
|| ||||| | ||||| ||||| | ||| |||| ||| || | ||| ||
Sbjct 67982827 CTGGAATCCATCAGCGGGCCATTTGCATTTATGGGGCCGGGGACCTGCACTGGATTCTCC 67982886
Query 14512 AGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
||| || ||||| || || |||||||| |||
Sbjct 67982887 AGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 67982918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658644679159040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |