Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4 136 5e-27 seq12 86.0 8e-12 >seq4 Length=81198604 Score = 136 bits (150), Expect = 5e-27 Identities = 565/885 (64%), Gaps = 45/885 (5%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 |||||||| |||||||| || || || || || ||| | || ||||| || || ||| | Sbjct 66968843 GAAGAGGTGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGCTT 66968784 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | |||||||||||||||||| || ||||| |||| || | || |||||| | Sbjct 66968783 GACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATTCAGGTGGACACA 66968724 Query 13803 AAGTCCGGCGACGAGTTCATCCGGGGCGTCTC-GGCCATCGCCAGGTGCTTCCCTAACGT 13861 || || | || ||| | | | || || ||| || |||||| ||| || Sbjct 66968723 AAATCAGAGGAATCGTTTTTG-GCTACAGCTGTGGGCATGGCATCCTGCTTCAGTAATGT 66968665 Query 13862 GGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGA 13921 | ||| | |||| | ||||||||| | |||||||| || || ||||| || Sbjct 66968664 CTTTGTCGCCAGTCAGCTGGAGAGCGTGGTGTATGCTTCCTGGAGCCGGGTTCAGGCTGA 66968605 Query 13922 CCTCAGCTGCATGTCGGACCT-----GGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTC 13976 ||| | ||||||| |||||| ||| | | | | |||| ||||||| | Sbjct 66968604 CCTTAACTGCATGCAGGACCTCTCCAGGATGAATGCAG-----ACTGGAAGTACCTGATA 66968550 Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || || ||||| ||||| || || | || ||||||||||| || || || ||| ||| Sbjct 66968549 AATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAG 66968490 Query 14037 GCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAA--------GC 14088 || || ||||| ||| || | ||| | ||||| ||| || | Sbjct 66968489 TTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCATAAAAAAGAAAGG 66968430 Query 14089 TGCACC--GCATCAGGAAGAGGCACGTGG-TGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | |||| | |||| |||| ||| ||| || |||||| | Sbjct 66968429 TGGAAAAAGCATTATGAAGT----CGTGAATGGAAAGC----------TGACCAACACGG 66968384 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 | | |||| | || || || | || | ||| |||||| || || |||| Sbjct 66968383 GAACTGACAAAATACATCCACCTCTTGAAACACCTCTGTTTTCGGGAAGTGCCTATTTTG 66968324 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||||| |||| | ||||| | || ||| || || | | | | ||| Sbjct 66968323 TGGTCAGTAGGGAATAGGTGGAGTATGTGCTCCAGAACCAAAATATCCAAAAGTTTATGG 66968264 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | | ||||| |||||||| ||||| | || |||||||| | ||||| || Sbjct 66968263 AGTGGGCCAAAGACACATACAGCCCTGACGATTATCTCTGGGCCACTATTCAGAGGATCC 66968204 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTC--ACGTCA--AGTACGACACCTCGGACATGTGG 14381 || | ||| ||| || | || | | | || |||||||||| || |||||| | Sbjct 66968203 CCGA-AGTCCCAGGG---TCACTGTCCTTAAGCCATAAGTACGACACGTCTGACATGCAG 66968148 Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441 || | | |||||| || || ||||| |||| || || || | || || |||| Sbjct 66968147 GCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCCCC 66968088 Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTG 14501 |||||||| |||| |||| ||||||| | | || | ||| | ||||| | || ||| || Sbjct 66968087 TACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACTTG 66968028 Query 14502 AAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || ||| || | |||| | || |||| |||||||| |||||| Sbjct 66968027 AACTGGATGTTGCGCGTGCACCATTTGTTTGCCAACAATTTCGAC 66967983 >seq12 Length=127780087 Score = 86.0 bits (94), Expect = 8e-12 Identities = 186/275 (68%), Gaps = 10/275 (4%) Strand=Plus/Plus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACG--GGACGC 14334 ||||| || ||||| || || ||||| ||||||||| | ||| | || || ||| || Sbjct 67982649 GACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGCG--TGCACCATGGATGC 67982706 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | || | ||| ||| |||||| ||| ||| |||||| |||| | |||| Sbjct 67982707 CTGGCTCTGTTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGC 67982766 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||||| || ||||||| ||| ||| | ||||| | || | |||||| Sbjct 67982767 TGGTCAAGTGGCAGGACCACGAGGGAGATGTCAGCATGGGGGCACCTTATGCACCTTGCT 67982826 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGG---CTGA 14511 || ||||| | ||||| ||||| | ||| |||| ||| || | ||| || Sbjct 67982827 CTGGAATCCATCAGCGGGCCATTTGCATTTATGGGGCCGGGGACCTGCACTGGATTCTCC 67982886 Query 14512 AGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 ||| || ||||| || || |||||||| ||| Sbjct 67982887 AGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 67982918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658644679159040