Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq18 96.9 3e-15
seq9 87.8 1e-12
seq27 82.4 6e-11
>seq18
Length=152661129
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 110398 TCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCG 110457
|| || || || || ||||| |||| || || ||||| | | ||||| |||||| ||
Sbjct 15388717 TCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCT 15388658
Query 110458 GGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTGACTGAA 110517
|| ||||||||||| ||||| |||||||| ||||||| ||||| || ||| ||||||
Sbjct 15388657 GGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCTTCTACTGAA 15388598
Query 110518 GAC 110520
|||
Sbjct 15388597 GAC 15388595
>seq9
Length=141945777
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460
|| || || || ||||| |||| || || ||||| | | ||||| |||||| || ||
Sbjct 104084240 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 104084299
Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508
||||||||||| ||||| |||||||| ||||||| ||||| || |||
Sbjct 104084300 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 104084347
>seq27
Length=84643473
Score = 82.4 bits (90), Expect = 6e-11
Identities = 119/168 (71%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
||| || |||| || || || ||||||||||||||||| || || || || || | ||
Sbjct 48027941 CATATCTTTGTATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATC 48027882
Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342
|| || | |||| ||||||| |||| | ||||||| || |||||||| ||
Sbjct 48027881 CCCTTCAGCTCTGTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGAGACCCGTTGGCATC 48027822
Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||| || || || ||||| ||| || || || | ||| ||||| ||
Sbjct 48027821 CCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATCC 48027774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406253557048068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |