Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq27 96.9 3e-15
>seq27
Length=84643473
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/155 (75%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| ||| | ||||| || || ||| ||| ||||| || ||||| || |||||||||
Sbjct 48027778 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCTC 48027837
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411
||||||| || |||| | ||| ||| ||| | | | || || || || ||||| ||
Sbjct 48027838 GAGACTTCCTTGACAGCCTGGGCTTCTCCAAC-AGAGCTGAAGGGGATTTAGGCCCAGTT 48027896
Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
|| || ||||||||||| || |||||||| || ||
Sbjct 48027897 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 48027931
Score = 96.9 bits (106), Expect = 3e-15
Identities = 116/155 (75%), Gaps = 2/155 (1%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || || ||||| || || || || |
Sbjct 48027931 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCTAAATCCCCTTCAGCT 48027872
Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017
| | ||| ||| ||| | |||| || |||||||||||||||| || ||||| || ||
Sbjct 48027871 CT-GTTGGAGAAGCCCAGGCTGTCAAGGAAGTCTCGAGACCCGTTGGCATCCCAAATTTT 48027813
Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
||| ||| ||| || || ||||| | ||| ||||
Sbjct 48027812 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 48027778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448198079948880
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |