Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq31 192 5e-44 seq27 104 2e-17 seq3 93.3 3e-14 seq18 89.7 4e-13 >seq31 Length=75455120 Score = 192 bits (212), Expect = 5e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || ||||||||| | ||||| |||||||||||||| || || |||||||||||||||| Sbjct 73576166 CCCCAAGAAGTTTTGATTGTGACATGGCAAAAAGTCAAGGCTGTAAGCCCAGAAAACATG 73576225 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 73576226 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 73576285 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || ||||||||||| || || ||||| ||| Sbjct 73576286 ATCACCCAGCTGGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTGGAGGAT 73576345 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 73576346 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 73576405 Query 1515 TGTCTAACCCT 1525 || || || || Sbjct 73576406 TGCCTCACTCT 73576416 >seq27 Length=84643473 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 83982991 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 83982932 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||| ||||| |||||||| | | || | |||| || |||| | Sbjct 83982931 TTCGGAGGGGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 83982872 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 83982871 ATCGCGCTGTGGATGACCGA 83982852 >seq3 Length=88455658 Score = 93.3 bits (102), Expect = 3e-14 Identities = 228/338 (67%), Gaps = 11/338 (3%) Strand=Plus/Minus Query 2347 GTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTTTGTTGCAAAAAGTATA 2406 ||||||| |||| | || || || || |||| || ||||| ||| |||| |||||| | Sbjct 50865119 GTTCTCAATAGAGAACTCAAGGAACCTCCACAAGGAGCTCATTTTCTTGCCAAAAGTCTG 50865060 Query 2407 GATCACGCTCTGGAAATTATAATAGGACCAGAATTAAAAGACAGGGTGGATAAGATTTGG 2466 ||| | || | ||| |||| | ||||| ||||| | | | | || | | |||| Sbjct 50865059 GATGATGCCTTAGAACTTATCAAGCAACCAGCATTAACAAATAAACTAGACATGGTTTGA 50865000 Query 2467 ATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAAC--AGATG 2523 | | || | || ||| | ||| |||| ||| | |||| | || | |||| Sbjct 50864999 A-AGCAGGAAGCAGTTCTATATATAAGGAAGCCATGAACAAGC-CAGGCCATTTTAGAT- 50864943 Query 2524 CTGTTTTTAACAAGGATTC-TGCAAAAATTTGAATGTGATACATACTTCCCAGAAATTAA 2582 | ||| | | | | || ||||| |||||||| ||||||||| || ||||||| | | Sbjct 50864942 -TATTTGTGGCTAAAAATCATGCAAGAATTTGAAAGTGATACATTTTTTCCAGAAAATGA 50864884 Query 2583 TCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAAGA 2642 | | || || |||| || | |||| |||||||||||| ||| || ||||| || Sbjct 50864883 TTTGGAAAATTATAAACTTCTCCCGGAATATCCAGGTGTTCCTTCT---GTCCAAGAGGA 50864827 Query 2643 AAATGGAATTAGATACAAATTTGAGATATATGAAAAAA 2680 || | |||| |||||| |||| |||| ||||||| Sbjct 50864826 GAAAGTCATTAAGTACAAACTTGAAGTATAAGAAAAAA 50864789 >seq18 Length=152661129 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| | | ||||| || | || | |||| | || || | || | ||||| Sbjct 15388485 CTAAACTGCACCGTCGCTGTGTCCCAGAACACGGGCGTCGGCAAGAGCGGGAGCCTGCCC 15388544 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCT---TCTTCCACT 2256 |||||||| || ||||||||| | |||| |||| |||||| | ||||| Sbjct 15388545 TGGCCTCCACTCGGAAATGAATTCAGGTATTTCCAAAGAATGACTACAGTGTCTTCAGTA 15388604 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| || Sbjct 15388605 GAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAAG 15388664 Query 2317 AGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGA 2369 | | ||||| || ||||||| ||| | |||||||||||| | || || || Sbjct 15388665 AATCGACCTTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGA 15388717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414418814566156