Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq24 192 1e-43 seq23 181 2e-40 seq5 176 1e-38 seq31 150 4e-31 seq13 149 1e-30 seq12 145 2e-29 seq11 131 4e-25 seq8 104 5e-17 seq4 100 7e-16 seq33 91.5 3e-13 >seq24 Length=78163535 Score = 192 bits (212), Expect = 1e-43 Identities = 177/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||||||||| | || || |||||||||||||| ||||| ||||| || || | | || Sbjct 22107626 ACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 22107685 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| |||||||| || ||||| || | ||| ||||||||||||| ||| Sbjct 22107686 ACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 22107745 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || || || ||| ||| |||||||| Sbjct 22107746 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAG 22107805 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 |||||| ||||| ||||| || ||||| || || | ||||||| Sbjct 22107806 AGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq23 Length=109465363 Score = 181 bits (200), Expect = 2e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| || | || |||||||| |||| |||||||| ||| Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||||||| | || ||||| |||||||| ||| Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||||| Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355 >seq5 Length=178027732 Score = 176 bits (194), Expect = 1e-38 Identities = 175/225 (78%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGG 210951 ||||||||| | ||||| |||||||||||||| ||||| ||||| || || | ||| | Sbjct 42512299 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 42512358 Query 210952 ---TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 ||| || ||||||||| |||||||| || ||||| || | ||| ||||||||||||| Sbjct 42512359 ATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 42512418 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||| ||||||||||| || || ||||| ||| | || ||| | |||| Sbjct 42512419 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCT 42512478 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 |||||||||| ||||| ||||| || ||| | || || | ||||| Sbjct 42512479 CGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 Score = 150 bits (166), Expect = 4e-31 Identities = 125/153 (82%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || |||||||| |||||||| ||||| | ||| || | |||||| Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || |||||||| |||| |||||||| ||| Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055 |||||||| |||||||| |||||||||||| Sbjct 139077023 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCA 139077055 >seq31 Length=75455120 Score = 150 bits (166), Expect = 4e-31 Identities = 167/222 (75%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | ||||| || ||||||| ||| ||||| ||||| || | | || | Sbjct 60055153 AAGTCTCAACACAAGATGCAGAGTGGGCTCCTTTTGAATGTTGTAGGTCAAA---GTACA 60055209 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 || ||||||||| |||||||| || ||||| || | ||| |||||||||||||||||||| Sbjct 60055210 TCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTC 60055269 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| || || || ||| || ||||| ||||| Sbjct 60055270 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGT 60055329 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||| ||||| | || || ||||| | || | |||||| || Sbjct 60055330 GATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 60055371 >seq13 Length=89791019 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| ||||| || || || | || || | ||||| Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| |||||||| || || || |||||||| || | || |||||||| Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || ||||||||| | || ||||| || ||||| ||| Sbjct 87684637 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 87684578 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 87684577 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq12 Length=127780087 Score = 145 bits (160), Expect = 2e-29 Identities = 166/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | || || |||||| ||||||| ||||| ||| | || || ||| | Sbjct 13420456 ACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCA--AAGTAT 13420399 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| |||||||| || ||||| || | ||||||| ||||||||| || Sbjct 13420398 G--TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCT 13420341 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| | ||||||||| || || ||||| || || || ||| | |||||||| Sbjct 13420340 TTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAG 13420281 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 |||||| ||||| || | || ||||| ||||| | ||||| Sbjct 13420280 AGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240 >seq11 Length=140388259 Score = 131 bits (144), Expect = 4e-25 Identities = 166/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGGTC 210953 || |||| | ||||| |||||||||||||| || || ||||| || | | ||| || | Sbjct 76921590 GACGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGAC 76921531 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | | ||||||||| | ||| || || | ||| || | ||| |||||||||||||||||| Sbjct 76921530 AT-CTATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCT 76921472 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC--AGAGCTTTCAACCTCGA 211071 ||||| ||||| ||||| || | ||||| || | || ||||||| |||| || Sbjct 76921471 TCCTTATCCTGAATCTTGGCCTTTGCATTTTCTATCATATCCAAGAGCTT--GACCTTGA 76921414 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| ||| || | || || || ||||| || || ||||||||| Sbjct 76921413 GAGAGATGCTCATCCCTGTCAGGGTCTTCACGAAAACCTGCATT 76921370 Score = 107 bits (118), Expect = 4e-18 Identities = 150/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967 ||||| |||||||||||| ||||| ||||| || || | || | |||||| ||||| Sbjct 111013906 AAGGTAAAGAGTGGACTCCTTTTGCATGTTGTA----GCCAAAGTACATCCATCGTCCAG 111013961 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||||| || ||| | || | ||| || | ||||||| ||||| || || ||||| Sbjct 111013962 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATTGGGAGGAATTCCTTTGTTATCTTGGAT 111014021 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || ||||| || | || ||| || || ||| ||||||| | ||| | Sbjct 111014022 CTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGATGGACTTCCT 111014081 Query 211088 CGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| | || | |||||| || Sbjct 111014082 TGTCAGGGTCTTCATGAAAATCTGCATCTT 111014111 >seq8 Length=55920303 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||| | || ||||||||||| ||||| || || || | | | | || | Sbjct 51506765 AGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTC 51506824 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||| |||| || || ||| |||||||||| || | || |||||||| Sbjct 51506825 TCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCT 51506884 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || || |||||||| | || ||||| || || || ||| Sbjct 51506885 TGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTC 51506944 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||| | || ||||| ||| | | |||||| || Sbjct 51506945 TTGCCCATCAGGGTCTTCACAGAGATCTGCATCTT 51506979 >seq4 Length=81198604 Score = 100 bits (110), Expect = 7e-16 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| |||||||||||||| |||||||| || || | ||||| ||||| Sbjct 5807555 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCT 5807496 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || ||||| ||||| | | || |||| || ||| | | || || Sbjct 5807495 TCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGG-GGAGGTGC--CC---TCT 5807442 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || | || |||||||||||| | || ||||| || ||||| ||| Sbjct 5807441 TGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5807382 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 5807381 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 >seq33 Length=121428352 Score = 91.5 bits (100), Expect = 3e-13 Identities = 150/214 (70%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 210904 GGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTT 210963 |||| | ||| | || ||||||| |||||||| | || | ||| || ||||||| Sbjct 51188289 GGACCAAGTGCACGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTT 51188348 Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023 ||| |||||||||||| | || || | || |||||||| || | |||||||| ||| Sbjct 51188349 CCAACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCAGG-GGGATGCCTTCCTTACCCT 51188407 Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083 | | ||| ||||| || | |||| ||||| || || ||||| || || || ||| Sbjct 51188408 GTACCTTGGCCTTCACATTCTTGATGATGTCACTGCACTCCACCTCCAGGGTAATGATCT 51188467 Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | || ||| || ||||| | |||||||| Sbjct 51188468 TGCTGGT--CAGTTTTCACAAAGATTTGCATTTT 51188499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158981518081835