Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq24 192 1e-43
seq23 181 2e-40
seq5 176 1e-38
seq31 150 4e-31
seq13 149 1e-30
seq12 145 2e-29
seq11 131 4e-25
seq8 104 5e-17
seq4 100 7e-16
seq33 91.5 3e-13
>seq24
Length=78163535
Score = 192 bits (212), Expect = 1e-43
Identities = 177/224 (79%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
||||||||| | || || |||||||||||||| ||||| ||||| || || | | ||
Sbjct 22107626 ACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 22107685
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| |||||||||||| |||||||| || ||||| || | ||| ||||||||||||| |||
Sbjct 22107686 ACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 22107745
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| ||||||||||| || || ||||| || || || ||| ||| ||||||||
Sbjct 22107746 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAG 22107805
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
|||||| ||||| ||||| || ||||| || || | |||||||
Sbjct 22107806 AGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq23
Length=109465363
Score = 181 bits (200), Expect = 2e-40
Identities = 169/215 (79%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| || ||||| || | || |||||||| |||| |||||||| |||
Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| |||||||| |||||||||||| | || ||||| |||||||| |||
Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || || || ||||| || || | ||||||||
Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355
>seq5
Length=178027732
Score = 176 bits (194), Expect = 1e-38
Identities = 175/225 (78%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGG 210951
||||||||| | ||||| |||||||||||||| ||||| ||||| || || | ||| |
Sbjct 42512299 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 42512358
Query 210952 ---TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008
||| || ||||||||| |||||||| || ||||| || | ||| |||||||||||||
Sbjct 42512359 ATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 42512418
Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068
||||||||| ||||||||||| || || ||||| ||| | || ||| | ||||
Sbjct 42512419 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCT 42512478
Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113
|||||||||| ||||| ||||| || ||| | || || | |||||
Sbjct 42512479 CGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Score = 150 bits (166), Expect = 4e-31
Identities = 125/153 (82%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || |||||||| |||||||| ||||| | ||| || | ||||||
Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||||||||| || ||||| || | || |||||||| |||| |||||||| |||
Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA 211055
|||||||| |||||||| ||||||||||||
Sbjct 139077023 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCA 139077055
>seq31
Length=75455120
Score = 150 bits (166), Expect = 4e-31
Identities = 167/222 (75%), Gaps = 3/222 (1%)
Strand=Plus/Plus
Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955
|||||| | ||||| || ||||||| ||| ||||| ||||| || | | || |
Sbjct 60055153 AAGTCTCAACACAAGATGCAGAGTGGGCTCCTTTTGAATGTTGTAGGTCAAA---GTACA 60055209
Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015
|| ||||||||| |||||||| || ||||| || | ||| ||||||||||||||||||||
Sbjct 60055210 TCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTC 60055269
Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075
||| ||||||||||| || || ||||| || || || ||| || ||||| |||||
Sbjct 60055270 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGT 60055329
Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
||| ||||| | || || ||||| | || | |||||| ||
Sbjct 60055330 GATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCATCTT 60055371
>seq13
Length=89791019
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || | ||| || ||||||||||| ||||| || || || | || || | |||||
Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| ||||| |||||||| || || || |||||||| || | || ||||||||
Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| || || || ||||||||| | || ||||| || ||||| |||
Sbjct 87684637 TGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 87684578
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| ||||| || ||||| ||||| | ||||||
Sbjct 87684577 TTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq12
Length=127780087
Score = 145 bits (160), Expect = 2e-29
Identities = 166/221 (75%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|| |||||| | || || |||||| ||||||| ||||| ||| | || || ||| |
Sbjct 13420456 ACAAAGTCTCAACACTAGATGAAGAATGGACTCCTTTTGAATGCTGTAGTCA--AAGTAT 13420399
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
|||||||||||| |||||||| || ||||| || | ||||||| ||||||||| ||
Sbjct 13420398 G--TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAATTCT 13420341
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
|||||| | ||||||||| || || ||||| || || || ||| | ||||||||
Sbjct 13420340 TTCCTTATTCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTTGACCTCGAG 13420281
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113
|||||| ||||| || | || ||||| ||||| | |||||
Sbjct 13420280 AGTGATGGTCTTCTCCATCAGGGTCTTCACAAAAATCTGCA 13420240
>seq11
Length=140388259
Score = 131 bits (144), Expect = 4e-25
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCG-CAAGGGTC 210953
|| |||| | ||||| |||||||||||||| || || ||||| || | | ||| || |
Sbjct 76921590 GACGTCTCAACACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAGTTAGACAAAGGAC 76921531
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| | ||||||||| | ||| || || | ||| || | ||| ||||||||||||||||||
Sbjct 76921530 AT-CTATCTTCCAGTTTCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCT 76921472
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC--AGAGCTTTCAACCTCGA 211071
||||| ||||| ||||| || | ||||| || | || ||||||| |||| ||
Sbjct 76921471 TCCTTATCCTGAATCTTGGCCTTTGCATTTTCTATCATATCCAAGAGCTT--GACCTTGA 76921414
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115
||| ||| || | || || || ||||| || || |||||||||
Sbjct 76921413 GAGAGATGCTCATCCCTGTCAGGGTCTTCACGAAAACCTGCATT 76921370
Score = 107 bits (118), Expect = 4e-18
Identities = 150/210 (71%), Gaps = 4/210 (2%)
Strand=Plus/Plus
Query 210908 AAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAG 210967
||||| |||||||||||| ||||| ||||| || || | || | |||||| |||||
Sbjct 111013906 AAGGTAAAGAGTGGACTCCTTTTGCATGTTGTA----GCCAAAGTACATCCATCGTCCAG 111013961
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
|||||||| || ||| | || | ||| || | ||||||| ||||| || || |||||
Sbjct 111013962 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATTGGGAGGAATTCCTTTGTTATCTTGGAT 111014021
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
||| || || ||||| || | || ||| || || ||| ||||||| | ||| |
Sbjct 111014022 CTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGATGGACTTCCT 111014081
Query 211088 CGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| || ||||| | || | |||||| ||
Sbjct 111014082 TGTCAGGGTCTTCATGAAAATCTGCATCTT 111014111
>seq8
Length=55920303
Score = 104 bits (114), Expect = 5e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|| || ||| | || ||||||||||| ||||| || || || | | | | || |
Sbjct 51506765 AGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTC 51506824
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| |||| |||| || || ||| |||||||||| || | || ||||||||
Sbjct 51506825 TCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCT 51506884
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
||||| || ||| || || || |||||||| | || ||||| || || || |||
Sbjct 51506885 TGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGTC 51506944
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
|| ||| | || ||||| ||| | | |||||| ||
Sbjct 51506945 TTGCCCATCAGGGTCTTCACAGAGATCTGCATCTT 51506979
>seq4
Length=81198604
Score = 100 bits (110), Expect = 7e-16
Identities = 151/212 (71%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| | ||| |||||||||||||| |||||||| || || | ||||| |||||
Sbjct 5807555 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCT 5807496
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|||||||| || ||||| ||||| | | || |||| || ||| | | || ||
Sbjct 5807495 TCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGG-GGAGGTGC--CC---TCT 5807442
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|||||||| || | || |||||||||||| | || ||||| || ||||| |||
Sbjct 5807441 TGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 5807382
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || | ||||| || || | ||||||
Sbjct 5807381 TTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350
>seq33
Length=121428352
Score = 91.5 bits (100), Expect = 3e-13
Identities = 150/214 (70%), Gaps = 3/214 (1%)
Strand=Plus/Plus
Query 210904 GGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTT 210963
|||| | ||| | || ||||||| |||||||| | || | ||| || |||||||
Sbjct 51188289 GGACCAAGTGCACGGTCAACTCTTTCTGGATGTTGTGATAGGAAAGAGTGTAGCCATCTT 51188348
Query 210964 CCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCT 211023
||| |||||||||||| | || || | || |||||||| || | |||||||| |||
Sbjct 51188349 CCAACTGCTTGCCTGCAGAAATGAGTCTCTGCTGGTCAGG-GGGATGCCTTCCTTACCCT 51188407
Query 211024 GGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCT 211083
| | ||| ||||| || | |||| ||||| || || ||||| || || || |||
Sbjct 51188408 GTACCTTGGCCTTCACATTCTTGATGATGTCACTGCACTCCACCTCCAGGGTAATGATCT 51188467
Query 211084 TTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117
| | || ||| || ||||| | ||||||||
Sbjct 51188468 TGCTGGT--CAGTTTTCACAAAGATTTGCATTTT 51188499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1158981518081835
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |