Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq13 122 7e-23 seq23 87.8 2e-12 >seq13 Length=89791019 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | || | |||||| || || ||| |||||| || ||||| || || | Sbjct 87684773 GCCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGA 87684714 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || || | || || |||||||||||||| || || |||||||||||||| ||||| Sbjct 87684713 CAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGG 87684654 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | || ||| ||||| |||||| ||||| || | | || || || | ||| | Sbjct 87684653 G-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 87684595 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || | ||||| | || |||||||| || || |||||||| ||||||| Sbjct 87684594 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCATCT 87684544 >seq23 Length=109465363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| | ||| || | | || || ||||||||||| ||||| Sbjct 83252549 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAA 83252490 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | ||||||||| | ||| | || || || ||| ||| || || | | Sbjct 83252489 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 83252430 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || || || | |||||| |||| ||||| | || || ||||| || || || Sbjct 83252429 CTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCAC 83252370 Query 39273 AAAGATTTGCATCTTTAC 39290 ||||||||||| || || Sbjct 83252369 GAAGATTTGCATTTTGAC 83252352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429485506436327