Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq24 113 3e-20
seq13 98.7 7e-16
seq23 91.5 1e-13
>seq24
Length=78163535
Score = 113 bits (124), Expect = 3e-20
Identities = 155/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668
||||||| |||||||| || ||||| ||||| || || ||||||||||| || || ||
Sbjct 22107849 AAATGCAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCT 22107790
Query 23669 CGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|||| || | |||| |||| || || || || ||||| | || || || |
Sbjct 22107789 CGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACC 22107730
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| || | | || ||||| ||||| ||||||||||| | | | ||||| || ||||
Sbjct 22107729 AGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACA 22107670
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||| ||||| |||||||| | ||| |||| || ||
Sbjct 22107669 ACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAG 22107633
>seq13
Length=89791019
Score = 98.7 bits (108), Expect = 7e-16
Identities = 164/233 (70%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || || ||||| ||||| || || ||||| || || || || |||
Sbjct 87684546 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87684605
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | |||| | ||||| || || | || || || ||
Sbjct 87684606 GACACCATTGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCACCTGACCA 87684664
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||| | || || || |||||||| ||||| || | |||||| | || |||||
Sbjct 87684665 GCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGCCGCACTCTGTCAGACTACAA 87684724
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG-ATCA 23841
|| || ||||||||||| | || || || | | ||||||| || ||||
Sbjct 87684725 TATCCAGAAAGAGTCCACCCTGCACTTGGTGCTCCGTCTGCGAGGCGGCATCA 87684777
>seq23
Length=109465363
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| || ||||| || ||||| || || || || |||||||| || || || ||
Sbjct 83252355 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGGTGGAGCCC 83252414
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | || | | || || || || || ||||| | || || ||
Sbjct 83252415 AGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 83252474
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | | || |||||||||||||| |||||||| | ||||| | ||||||
Sbjct 83252475 CAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCTTTCTGATTAC 83252534
Query 23788 AACATACAAAAAGAGTCCAC 23807
||||| || |||||||| ||
Sbjct 83252535 AACATCCAGAAAGAGTCGAC 83252554
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337962312351332
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |