Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq24 165 2e-35 seq23 140 8e-28 seq5 138 3e-27 seq19 123 6e-23 seq13 122 2e-22 seq2 114 3e-20 seq11 104 6e-17 seq27 96.9 8e-15 seq2087 95.1 3e-14 seq8 86.0 1e-11 seq4 84.2 5e-11 >seq24 Length=78163535 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| || || || |||||||| || ||||| | ||||| || | |||||| Sbjct 22107626 ACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 22107685 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| || ||||| ||||| ||||| |||| ||| ||||| || ||||| || Sbjct 22107686 ACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 22107745 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||| || |||||||| ||| ||| ||| || || || |||| ||| || || | Sbjct 22107746 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAG 22107805 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| ||||| ||||||| || || | ||| | |||||||| Sbjct 22107806 AGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq23 Length=109465363 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| || | || ||||| || ||||| |||||||| || Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTC 83252390 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||||||| Sbjct 83252389 TTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355 Score = 105 bits (116), Expect = 2e-17 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || || ||||| ||||| || |||||||| | || ||| Sbjct 49260236 CAAATTTATAATGTAATTGTAACTGCACATGCGTTTGTAATAATTTTCTTCATAGTAATG 49260295 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || || |||||| | ||||| | || |||||||| |||||| Sbjct 49260296 CCAATTATAATTGGAGGATTTGGCAATTGACTAGTTCCCCTGATAATTGGTGCCCCTGAT 49260355 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 || || || || | || ||||||||||| ||| | || || ||||| || || Sbjct 49260356 ATAGCATTCCCTCAAATAAATAATATAAGTTTCTGAATCCTCCCTCCTTCTTTTTT 49260411 >seq5 Length=178027732 Score = 138 bits (152), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||||| ||||| || |||||||| || ||||| | ||||| || | |||||| Sbjct 42512299 ACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 42512358 Query 225552 -TCTC---CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAA 225607 | || | |||||| || ||||| ||||| ||||| |||| ||| ||||| || |||| Sbjct 42512359 ATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAA 42512418 Query 225608 TACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGT 225667 | |||||||| || |||||||| ||| ||| ||| ||| | || |||| | || | Sbjct 42512419 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCT 42512478 Query 225668 CTAACGTGATCGTCTTGCCCGTCA 225691 | | ||||| ||||| ||||||| Sbjct 42512479 CGAGAGTGATGGTCTTCCCCGTCA 42512502 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| |||||||| | | ||| | |||||| Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||| ||||| || | || ||||| || ||||| |||||||| || Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||| ||||||||||| Sbjct 139077023 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054 >seq19 Length=127240616 Score = 123 bits (136), Expect = 6e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||||| ||| | || || ||||| ||||| || |||||||| | || || Sbjct 7721305 CCAAATTTATAACGTAATTGTAACTGCACATGCATTTGTAATAATTTTCTTCATAGTAAT 7721364 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || || || || |||||| | ||||| |||| |||||||| ||||| Sbjct 7721365 GCCAATTATAATTGGAGGATTTGGCAATTGACTAGTTCCCCTAATAATTGGTGCCCCTGA 7721424 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 ||| || || || || | || ||||||||||| ||| | || || || || || || || Sbjct 7721425 TATAGCATTCCCTCGGATAAATAATATAAGTTTCTGACTCCTCCCTCCCTCTTTTTTACT 7721484 Query 7731 A 7731 | Sbjct 7721485 A 7721485 >seq13 Length=89791019 Score = 122 bits (134), Expect = 2e-22 Identities = 143/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| ||||| |||| |||||| || | || ||| | ||||| Sbjct 87684757 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACAGAGTGCGGCCATCC 87684698 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || |||||||| || || || ||||| || || || || ||||||||| Sbjct 87684697 TCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCT 87684638 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| ||| || |||||||| || || || || | ||||| || Sbjct 87684637 TGGAT-TTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 87684579 Query 225681 CTTGCCCGTCA 225691 ||||||||||| Sbjct 87684578 CTTGCCCGTCA 87684568 >seq2 Length=63256308 Score = 114 bits (126), Expect = 3e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || ||||| | || || ||||| || || || ||||||||| | ||||| Sbjct 14256266 CCAAATTTATAATGTTATCGTAACCGCACATGCATTCGTAATAATTTTCTTTATAGTTAT 14256325 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| |||| || || || || || | |||| | ||||| ||||| |||||||| || || Sbjct 14256326 GCCAATTATAATTGGAGGATTTGGCAGTTGACTAGTTCCCTTAATAATTGGTGCCCCAGA 14256385 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || || | | ||||||||||| |||||| | || || || || || || || Sbjct 14256386 CATAGCATTCCCTCGAATAAACAATATAAGCTTTTGACTCCTCCCTCCCTCTTTCTTACT 14256445 Query 7731 A 7731 | Sbjct 14256446 A 14256446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| || ||||| ||||||||||| ||||| || || |||||||| || || | Sbjct 14256844 ATACTTCAGGGTGGCCAAAGAATCAGAATAAGTGTTGGTATAGAATAGGATCTCCGCCTC 14256785 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||| ||| ||||| ||| | ||||| ||||||| || ||||| Sbjct 14256784 CTGCTGGGTCAAAGAAGGTTGTATTTAAATTTCGGTCTGTTAA 14256742 >seq11 Length=140388259 Score = 104 bits (114), Expect = 6e-17 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 225507 AAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAG 225566 ||||| |||||||| || ||||| | ||||| |||||||| | ||||| || || Sbjct 111013906 AAGGTAAAGAGTGGACTCCTTTTGCATGTTGTA----GCCAAAGTACATCCATCGTCCAG 111013961 Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 ||||| ||||| ||| | |||| ||| || | ||| ||||| |||| || |||||||| Sbjct 111013962 TTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATTGGGAGGAATTCCTTTGTTATCTTGGAT 111014021 Query 225627 CTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| ||| ||| ||| || | ||||||| || || || ||||| | ||| | Sbjct 111014022 CTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGATGGACTTCCT 111014081 Query 225687 CGTCAAAGTTTTTATGAACACTTGCATTTT 225716 |||| || || ||||| | ||||| || Sbjct 111014082 TGTCAGGGTCTTCATGAAAATCTGCATCTT 111014111 >seq27 Length=84643473 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 4453 TTAATCAAAAATATTGTGAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATA 4512 ||||||| ||| || |||| || |||||||| || || || |||||||| || || Sbjct 61930052 TTAATCATAAAAAT----AATACCTGTCCATCAGTGATGGAAATGACATTTGTTGGAATG 61930107 Query 4513 TAAGCAGAAACATCACCTGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCA 4572 |||||||| |||||||| ||||||||||||| || || | || || | || |||||| Sbjct 61930108 TAAGCAGACACATCACCAGCTTGTGTTTCGATGACTGGCAGAGCAGTCAAGGAGCCACCA 61930167 Query 4573 CCAAAA 4578 |||||| Sbjct 61930168 CCAAAA 61930173 Score = 87.8 bits (96), Expect = 4e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| || || ||||||||||| ||||||| Sbjct 61930495 CACTTCAGTACCTGGCTCCTTACTCTGGATGTTCAATGGGGGAATATTTTAGGGATAATG 61930436 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| ||||| || ||||| ||| ||||| |||| Sbjct 61930435 GCAAACATGCTTTGATCATTTATGATGACTTATCCAAACAGGTCAA 61930390 >seq2087 Length=9410 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 |||||| || ||||| ||||| || ||||||||||| || ||||| || || |||||||| Sbjct 907 GAATATCTGTCCATCTGTAATTGAAATAACATTTGTTGGAATATATGCTGATACATCACC 848 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||||||| || | || ||||| ||||||| ||| || |||| Sbjct 847 AGCTTGTGTCTCTATAATTGGTAATGCTGTTAATGAACCTGCACC 803 >seq8 Length=55920303 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||| | || ||||| ||||| |||| |||||| || | | || | || | Sbjct 51506765 AGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGCGCAGCCCTTC 51506824 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| | || |||| || || ||| ||||||| ||||| || || ||||||||| Sbjct 51506825 TCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGGATGCCCTCCTTGTCT 51506884 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| || ||||||| || || || || | || || || Sbjct 51506885 TGGAT-TTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTAATGGT 51506943 Query 225681 CTTGCCCGTCA 225691 ||||||| ||| Sbjct 51506944 CTTGCCCATCA 51506954 >seq4 Length=81198604 Score = 84.2 bits (92), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| | ||| |||||||| ||||| |||| ||||| || | || || | |||| Sbjct 5807556 CAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATC 5807497 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || |||| || | | || || Sbjct 5807496 TTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCCCTC------ 5807443 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 5807442 TTGGATCTTGGCCTTGGCATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 5807383 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 5807382 CTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192355808846426