Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq14 136 3e-27 seq11 98.7 8e-16 seq21 89.7 4e-13 >seq14 Length=103589943 Score = 136 bits (150), Expect = 3e-27 Identities = 213/302 (71%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 76501496 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 76501555 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| |||||||| || || ||||| || | ||| |||||| Sbjct 76501556 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTGGGAGCTGATGTCATAGATGA 76501615 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| ||| || | | || Sbjct 76501616 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 76501674 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | | || || || ||||| ||| ||| || |||| Sbjct 76501675 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATATTTTACCCAGAAAT 76501732 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||| | || | | | ||||| ||| |||| || | ||||||||| || || || Sbjct 76501733 AGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 76501792 Query 32062 AA 32063 || Sbjct 76501793 AA 76501794 >seq11 Length=140388259 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || || |||||||| |||||||| || |||||||| ||| Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 25930352 Query 4692 AC 4693 || Sbjct 25930351 AC 25930350 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 25928508 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 25928449 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||||| || | |||||||| Sbjct 25928448 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 25928405 >seq21 Length=107358006 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || || ||||| || || || || ||||||||||||||||| || || | ||||| ||| Sbjct 81517106 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 81517047 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 || |||| || || | ||||| || |||||||| || | ||| || | ||||||||| Sbjct 81517046 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 81516988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426989855627507