Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_030656.1
Length=133492
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 3e-27
seq11 98.7 8e-16
seq21 89.7 4e-13
>seq14
Length=103589943
Score = 136 bits (150), Expect = 3e-27
Identities = 213/302 (71%), Gaps = 6/302 (2%)
Strand=Plus/Plus
Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824
|| ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | ||
Sbjct 76501496 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 76501555
Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884
|||| | ||||| ||||||| |||||||| || || ||||| || | ||| ||||||
Sbjct 76501556 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTGGGAGCTGATGTCATAGATGA 76501615
Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941
||| ||||||||||| ||||| |||| ||||||||||||| ||| || | | ||
Sbjct 76501616 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 76501674
Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001
| |||||||| ||| | | || || || ||||| ||| ||| || ||||
Sbjct 76501675 --TCAAAAAGGGTGATCGAATTGCACAGCTCATTTGTGAACGGATATTTTACCCAGAAAT 76501732
Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061
||| | || | | | ||||| ||| |||| || | ||||||||| || || ||
Sbjct 76501733 AGAGGAAGTTCAAGTTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 76501792
Query 32062 AA 32063
||
Sbjct 76501793 AA 76501794
>seq11
Length=140388259
Score = 98.7 bits (108), Expect = 8e-16
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631
|| ||||||||||| ||||| || ||||| || | || ||||| | |||| || ||
Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412
Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691
||||| ||||| | ||||| || || |||||||| |||||||| || |||||||| |||
Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 25930352
Query 4692 AC 4693
||
Sbjct 25930351 AC 25930350
Score = 89.7 bits (98), Expect = 4e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871
|||| ||| |||||||| || || || |||||||||||||||||||| ||||| || |||
Sbjct 25928508 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 25928449
Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915
|| || || || || || || | ||||| || | ||||||||
Sbjct 25928448 ATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTC 25928405
>seq21
Length=107358006
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991
|| || ||||| || || || || ||||||||||||||||| || || | ||||| |||
Sbjct 81517106 ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATA 81517047
Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050
|| |||| || || | ||||| || |||||||| || | ||| || | |||||||||
Sbjct 81517046 AAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 81516988
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 426989855627507
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |