Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1 132 7e-26 seq14 129 8e-25 seq11 116 5e-21 seq34 84.2 3e-11 >seq1 Length=104504130 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 62745002 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 62745061 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 62745062 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 62745121 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 62745122 TTTCTTATACCAT 62745134 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || ||||| ||||||||| || Sbjct 62719329 ATGTGCTGTGGTCTTTCAGCC 62719349 >seq14 Length=103589943 Score = 129 bits (142), Expect = 8e-25 Identities = 250/362 (69%), Gaps = 19/362 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| |||||| Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 76501736 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| |||| | | || || || || |||| ||||||| | || Sbjct 76501735 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 76501676 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 76501675 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 76501616 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || | |||||||||| || |||| | || ||||| | |||| Sbjct 76501615 TCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 76501556 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || | ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 76501555 GCCACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 76501501 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| || || | || || || || || ||||| | || || || || Sbjct 76501500 GC-ACTTTCTCCATCGGTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCCGCG 76501442 Query 46225 GC 46226 || Sbjct 76501441 GC 76501440 >seq11 Length=140388259 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| || Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 25930353 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851 ||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| | Sbjct 25932069 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 25932010 Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911 ||||| || || || | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 25932009 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 25931950 Query 47912 CATAAAATCAAATGGATT 47929 |||||| ||||||||||| Sbjct 25931949 CATAAAGTCAAATGGATT 25931932 >seq34 Length=181543317 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/203 (69%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| || |||||||| ||||| | ||| || |||| Sbjct 130342971 TCCAGTGGAACCAAAACCTCCTAAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 130342912 Query 45936 CAGATCAGGATAATAT-ATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTA 45994 | ||||||||| || || || | | || || || || || ||||||| | || | Sbjct 130342911 TATTTCAGGATAAAATTATCTGTGCACAAATGAGCTGTGCAGTTTGATCACCCTTTTTGA 130342852 Query 45995 TTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTT 46054 |||||| | ||||| ||| ||| || | || ||||| | |||||||||||| Sbjct 130342851 CTTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTG 130342792 Query 46055 CATCTATTACTCCCCCTCCCACA 46077 ||||||| || || |||||||| Sbjct 130342791 CATCTATGACACCAGCTCCCACA 130342769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694569123710560