Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq1 132 7e-26
seq14 129 8e-25
seq11 116 5e-21
seq34 84.2 3e-11
>seq1
Length=104504130
Score = 132 bits (146), Expect = 7e-26
Identities = 109/133 (82%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 62745002 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATTGAC 62745061
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| |||||||| || |||||||| |||||||| ||||| || || | | ||||||
Sbjct 62745062 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 62745121
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 62745122 TTTCTTATACCAT 62745134
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| || |||
Sbjct 62719209 GTACCAGCATTGAACAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 62719268
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
|||||||||||||| | || || || || ||||| || || | ||| | |||||||
Sbjct 62719269 TATGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 62719328
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
|| ||||| ||||||||| ||
Sbjct 62719329 ATGTGCTGTGGTCTTTCAGCC 62719349
>seq14
Length=103589943
Score = 129 bits (142), Expect = 8e-25
Identities = 250/362 (69%), Gaps = 19/362 (5%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| ||||||
Sbjct 76501793 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAACTTGAACTTCC 76501736
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || || ||| |||| |||| | | || || || || |||| ||||||| | ||
Sbjct 76501735 TCTATTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTCGATCACCCTTTTTG 76501676
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| ||| | ||| | || |||| | ||||||||||||
Sbjct 76501675 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 76501616
Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || | |||||||||| || |||| | || ||||| | ||||
Sbjct 76501615 TCATCTATGACATCAGCTCCCACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGA 76501556
Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|| | ||||||||| ||||| || | | ||| |||| || ||||| | |||
Sbjct 76501555 GCCACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 76501501
Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224
| ||||||||| || || | || || || || || ||||| | || || || ||
Sbjct 76501500 GC-ACTTTCTCCATCGGTGGTAATGTGTAATCATAGGCGCTGTACAGGTCGTAGCCCGCG 76501442
Query 46225 GC 46226
||
Sbjct 76501441 GC 76501440
>seq11
Length=140388259
Score = 116 bits (128), Expect = 5e-21
Identities = 97/119 (82%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| ||||| | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 25930353
Score = 89.7 bits (98), Expect = 7e-13
Identities = 103/138 (75%), Gaps = 3/138 (2%)
Strand=Plus/Minus
Query 47795 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTT 47851
||| |||||| |||| || | ||| ||| ||| || ||||| |||||||| |
Sbjct 25932069 TTAGAAGTCAGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATCCT 25932010
Query 47852 TTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 47911
||||| || || || | ||||| || || ||||| || || |||| ||| ||||||||
Sbjct 25932009 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 25931950
Query 47912 CATAAAATCAAATGGATT 47929
|||||| |||||||||||
Sbjct 25931949 CATAAAGTCAAATGGATT 25931932
>seq34
Length=181543317
Score = 84.2 bits (92), Expect = 3e-11
Identities = 141/203 (69%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935
||||||||| ||||| ||| || |||||||| ||||| | ||| || ||||
Sbjct 130342971 TCCAGTGGAACCAAAACCTCCTAAATCCCTTTCAGTGTTATCTAAAACTTGAACATCCTC 130342912
Query 45936 CAGATCAGGATAATAT-ATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTA 45994
| ||||||||| || || || | | || || || || || ||||||| | || |
Sbjct 130342911 TATTTCAGGATAAAATTATCTGTGCACAAATGAGCTGTGCAGTTTGATCACCCTTTTTGA 130342852
Query 45995 TTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTT 46054
|||||| | ||||| ||| ||| || | || ||||| | ||||||||||||
Sbjct 130342851 CTTCAAACCTTTCTTTGCCAAAATTACATAGTACAACACCAATGCTTCCTCTATAATCTG 130342792
Query 46055 CATCTATTACTCCCCCTCCCACA 46077
||||||| || || ||||||||
Sbjct 130342791 CATCTATGACACCAGCTCCCACA 130342769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694569123710560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |