Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq23 132 1e-25 seq24 118 2e-21 seq5 114 3e-20 seq4 87.8 4e-12 >seq23 Length=109465363 Score = 132 bits (146), Expect = 1e-25 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| ||||| |||||||||||||| | | || |||||||| || Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || ||||| || Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 83252393 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||||||||||| |||||||| Sbjct 83252392 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355 >seq24 Length=78163535 Score = 118 bits (130), Expect = 2e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 ||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| | Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || || ||||| || || |||||||| | | ||||||||| Sbjct 22107690 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 22107749 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || || ||| | |||| | || || || || || ||||| Sbjct 22107750 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 22107809 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 || || || ||||| || ||||||||||| | ||||||| Sbjct 22107810 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq5 Length=178027732 Score = 114 bits (126), Expect = 3e-20 Identities = 159/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT-TCT 151945 ||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | | Sbjct 42512303 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATAT 42512362 Query 151946 CCC---ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 || |||||| || || || || ||||| || || |||||||| | | ||||| Sbjct 42512363 CCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 42512422 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 |||||| || || || || || ||| | |||| ||| || || || || || || Sbjct 42512423 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAG 42512482 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||| || || || ||||| || ||| ||||||| | ||||| Sbjct 42512483 AGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| |||||||||||||| | | ||| | |||||| Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || |||||||| || Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022 Query 152013 TGAATTTT 152020 || || || Sbjct 139077023 TGGATCTT 139077030 >seq4 Length=81198604 Score = 87.8 bits (96), Expect = 4e-12 Identities = 149/215 (69%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | || ||||| |||||||| ||||||||||| || | | || | ||||| Sbjct 5807555 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCT 5807496 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || ||||| | ||||||||||| || ||| | || ||| Sbjct 5807495 TCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCC------CTCT 5807442 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || ||| || |||| | | |||| ||| ||| || || || || || Sbjct 5807441 TGGATCTTGGCCTTGGCATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 5807385 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||||||||||| |||||| Sbjct 5807384 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153651102166409