Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq23 132 1e-25
seq24 118 2e-21
seq5 114 3e-20
seq4 87.8 4e-12
>seq23
Length=109465363
Score = 132 bits (146), Expect = 1e-25
Identities = 161/218 (74%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| |||||||||||||| | | ||| | ||||||
Sbjct 83252569 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCT 83252510
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || ||| ||||| ||||| |||||||||||||| | | || |||||||| ||
Sbjct 83252509 TCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 83252450
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || || || |||| | | |||| ||| ||| || || ||||| ||
Sbjct 83252449 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGAGTGATG 83252393
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| ||||| || || ||||||||||||| ||||||||
Sbjct 83252392 GTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355
>seq24
Length=78163535
Score = 118 bits (130), Expect = 2e-21
Identities = 158/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
||||| | || ||||||||||| ||||| ||||| |||||||| || | ||||| |
Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|||||||| || || || || ||||| || || |||||||| | | |||||||||
Sbjct 22107690 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 22107749
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || || ||| | |||| | || || || || || |||||
Sbjct 22107750 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 22107809
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106
|| || || ||||| || ||||||||||| | |||||||
Sbjct 22107810 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq5
Length=178027732
Score = 114 bits (126), Expect = 3e-20
Identities = 159/221 (72%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT-TCT 151945
||||| | |||||||||||||| ||||| ||||| |||||||| || | ||||| | |
Sbjct 42512303 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATAT 42512362
Query 151946 CCC---ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
|| |||||| || || || || ||||| || || |||||||| | | |||||
Sbjct 42512363 CCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 42512422
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
|||||| || || || || || ||| | |||| ||| || || || || || ||
Sbjct 42512423 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAG 42512482
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103
||| || || || ||||| || ||| ||||||| | |||||
Sbjct 42512483 AGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Score = 87.8 bits (96), Expect = 4e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || |||||||| |||||||||||||| | | ||| | ||||||
Sbjct 139076903 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 139076962
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| |||||||||||||| | | || |||||||| ||
Sbjct 139076963 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 139077022
Query 152013 TGAATTTT 152020
|| || ||
Sbjct 139077023 TGGATCTT 139077030
>seq4
Length=81198604
Score = 87.8 bits (96), Expect = 4e-12
Identities = 149/215 (69%), Gaps = 12/215 (6%)
Strand=Plus/Minus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| | || ||||| |||||||| ||||||||||| || | | || | |||||
Sbjct 5807555 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCT 5807496
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || |||||| || ||||| | ||||||||||| || ||| | || |||
Sbjct 5807495 TCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTTCGGGGAGGTGCC------CTCT 5807442
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| || || ||| || |||| | | |||| ||| ||| || || || || ||
Sbjct 5807441 TGGATCTTGGCCTTGGCATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 5807385
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || | ||||||||||||| ||||||
Sbjct 5807384 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 5807350
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153651102166409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |