Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq24 163 6e-35 seq13 158 3e-33 seq23 154 3e-32 seq5 122 2e-22 seq12 113 9e-20 seq4 111 3e-19 seq8 109 1e-18 seq26 95.1 3e-14 seq11 93.3 9e-14 seq30 89.7 1e-12 seq20 89.7 1e-12 >seq24 Length=78163535 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || ||||| | ||| || ||||| ||||||||||||| Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 22107679 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || | ||||| || ||||| || || |||||||||| | ||| |||||| || Sbjct 22107680 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 22107739 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| || |||||||| || ||||| | || || || ||||| | |||||| Sbjct 22107740 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 22107799 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||||||||| ||||| ||||||| ||||| ||||| || ||||||| Sbjct 22107800 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849 >seq13 Length=89791019 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || ||||| || || |||| || | ||| ||||| ||||| |||||||| | Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||||||| || ||||| || || ||||||| ||| || |||||| || Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||||||||| || ||||| || | || || ||||| | ||||| Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| ||||||| ||||| || || |||||||| Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546 >seq23 Length=109465363 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | || ||||| ||||| || | || ||||| ||||||||||| |||| | Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||| |||||| || || ||||| ||||||||||| | | || |||||| ||| Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || ||||| || |||||||| || || ||| | ||||| ||||| | || || Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| || |||| ||||| ||||| || |||||||| Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355 >seq5 Length=178027732 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||| |||| || | | || ||||| | ||| || ||||| ||||||||||||| Sbjct 42512294 CCAGCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 42512353 Query 282933 AGCGTGCGGCCATCC----TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988 | || ||||| || ||||| || || |||||||||| | ||| |||||| Sbjct 42512354 AAAGTATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGG 42512413 Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||||| || ||||| || |||||||| || ||||| | || || | ||||| | | Sbjct 42512414 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTT 42512473 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||| ||||||||||| ||||| ||||||| ||| | ||||| ||||||| Sbjct 42512474 GACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523 Score = 116 bits (128), Expect = 8e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | ||| ||||| ||||| || | || ||||| ||||||||||| |||| | Sbjct 139076888 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 139076947 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||||||||| || || || || || |||||||| | | || |||||| ||| Sbjct 139076948 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 139077007 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || || ||||| || |||||||| || || ||| | ||||| ||||| Sbjct 139077008 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917 ||| |||||| ||| || | || ||| || |||| || | ||| ||||| ||| Sbjct 29064658 AAATTAAAAC----ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGG 29064713 Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977 ||||||||||||| || ||||| ||||| || || |||||||||||||||||||| | Sbjct 29064714 ATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTC 29064773 Query 282978 TGTTGGTC 282985 || ||||| Sbjct 29064774 TGCTGGTC 29064781 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 29083995 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29083937 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 131939449 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 131939391 >seq12 Length=127780087 Score = 113 bits (124), Expect = 9e-20 Identities = 140/190 (74%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||| |||||||| ||| || ||||| || ||||| || || |||||| Sbjct 13420425 TCCTTTTGAATGCTGTAGTCA--AAGTATGT--CCATCTTCCAGTTGCTTGCCAGCAAAG 13420370 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | ||||||| || ||||| | ||||| | |||||||| || ||||| | Sbjct 13420369 ATCAGTCTTTGTTGGCCAGGAGGAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTT 13420310 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || || ||||| | | ||| ||||||||||| ||||| || ||| ||||| || Sbjct 13420309 TCTATTGTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACA 13420250 Query 283089 AATATCTGCA 283098 || ||||||| Sbjct 13420249 AAAATCTGCA 13420240 >seq4 Length=81198604 Score = 111 bits (122), Expect = 3e-19 Identities = 141/192 (73%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| |||||||||||||||| || ||| | |||| || || |||||||| |||||| Sbjct 5807534 TCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAG 5807475 Query 282969 ATCAAACGTTGTTGGTCACCCGGA-ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| | || |||| | ||| | ||| ||||||||||| || || | | Sbjct 5807474 ATCAACCTCTGCTGGT-TCGGGGAGGTGCCC------TCTTGGATCTTGGCCTTGGCATT 5807422 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| | || || || || ||||| |||||||| ||||| ||||| || Sbjct 5807421 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 5807362 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 5807361 GAAGATCTGCAT 5807350 >seq8 Length=55920303 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | ||| ||||| ||||| | | ||| ||||| ||||| |||||||| | Sbjct 51506750 CCGCCTCACAGACGAAGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 51506809 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | | || ||| | ||| || ||| | || | || || | |||| |||||||| ||| Sbjct 51506810 GGAGCGCAGCCCTTCTCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGG 51506869 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||||||||| || ||||| || | || | ||||| | ||||| Sbjct 51506870 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACC 51506929 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || ||||| ||| ||| ||||| || | |||||||| || Sbjct 51506930 TCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAGAGATCTGCATCTT 51506979 >seq26 Length=55103472 Score = 95.1 bits (104), Expect = 3e-14 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 44428560 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACCGGGGTTCAATTCCCCGAT 44428501 >seq11 Length=140388259 Score = 93.3 bits (102), Expect = 9e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || ||||| ||||||||| || ||| | | ||||| || ||||| || || |||||| Sbjct 111013922 TCCTTTTGCATGTTGTAGCCA--AAG--TACATCCATCGTCCAGTTGCTTGCCAGCAAAG 111013977 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 ||| | ||| || | ||||| || | || ||||||||||| || ||||| | Sbjct 111013978 GTCAGTCTTTGCTGATTGGGAGGAATTCCTTTGTTATCTTGGATCTTGGCCTTTACATTT 111014037 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || || | || || | || ||||||| ||||||| | ||| | |||| ||||| | | Sbjct 111014038 TCTATTGCATCTGAGGGTTTGACTTCGGGAGTGATGGACTTCCTTGTCAGGGTCTTCATG 111014097 Query 283089 AATATCTGCATTTT 283102 || |||||||| || Sbjct 111014098 AAAATCTGCATCTT 111014111 >seq30 Length=117797301 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 30046636 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 30046578 >seq20 Length=149338601 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 9953431 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 9953373 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 38367974 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 38367916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046585251159266