Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq24 163 6e-35
seq13 158 3e-33
seq23 154 3e-32
seq5 122 2e-22
seq12 113 9e-20
seq4 111 3e-19
seq8 109 1e-18
seq26 95.1 3e-14
seq11 93.3 9e-14
seq30 89.7 1e-12
seq20 89.7 1e-12
>seq24
Length=78163535
Score = 163 bits (180), Expect = 6e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || | | || ||||| | ||| || ||||| |||||||||||||
Sbjct 22107620 ACCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGA 22107679
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
| || | ||||| || ||||| || || |||||||||| | ||| |||||| ||
Sbjct 22107680 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 22107739
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| || ||||| || |||||||| || ||||| | || || || ||||| | ||||||
Sbjct 22107740 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGAC 22107799
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
||||||||||| ||||| ||||||| ||||| ||||| || |||||||
Sbjct 22107800 CTCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCATTT 22107849
>seq13
Length=89791019
Score = 158 bits (174), Expect = 3e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || ||||| || || |||| || | ||| ||||| ||||| |||||||| |
Sbjct 87684772 CCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 87684713
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||||||| || ||||| || || ||||||| ||| || |||||| ||
Sbjct 87684712 AGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGTGGG 87684653
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||||||||| || ||||| || | || || ||||| | |||||
Sbjct 87684652 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 87684593
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| || ||||| ||||| ||||||| ||||| || || ||||||||
Sbjct 87684592 TCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
>seq23
Length=109465363
Score = 154 bits (170), Expect = 3e-32
Identities = 172/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | || ||||| ||||| || | || ||||| ||||||||||| |||| |
Sbjct 83252584 CCACCCCTCACACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 83252525
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||| |||||| || || ||||| ||||||||||| | | || |||||| |||
Sbjct 83252524 AGAGTGCAGCCATCTTCCAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 83252465
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || ||||| || |||||||| || || ||| | ||||| ||||| | || ||
Sbjct 83252464 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 83252405
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| |||||||| ||||| || |||| ||||| ||||| || ||||||||
Sbjct 83252404 TCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTT 83252355
>seq5
Length=178027732
Score = 122 bits (134), Expect = 2e-22
Identities = 165/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||| |||| || | | || ||||| | ||| || ||||| |||||||||||||
Sbjct 42512294 CCAGCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 42512353
Query 282933 AGCGTGCGGCCATCC----TCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACC 282988
| || ||||| || ||||| || || |||||||||| | ||| ||||||
Sbjct 42512354 AAAGTATATCCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGG 42512413
Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048
||||| || ||||| || |||||||| || ||||| | || || | ||||| | |
Sbjct 42512414 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTT 42512473
Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098
||| ||||||||||| ||||| ||||||| ||| | ||||| |||||||
Sbjct 42512474 GACCTCGAGAGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Score = 116 bits (128), Expect = 8e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| | ||| ||||| ||||| || | || ||||| ||||||||||| |||| |
Sbjct 139076888 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 139076947
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| ||||||||||| || || || || || |||||||| | | || |||||| |||
Sbjct 139076948 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 139077007
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039
|| || ||||| || |||||||| || || ||| | ||||| |||||
Sbjct 139077008 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTC 139077054
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 4/128 (3%)
Strand=Plus/Plus
Query 282858 AAAATAAAACGTGAACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGG 282917
||| |||||| ||| || | || ||| || |||| || | ||| ||||| |||
Sbjct 29064658 AAATTAAAAC----ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGG 29064713
Query 282918 ATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGT 282977
||||||||||||| || ||||| ||||| || || |||||||||||||||||||| |
Sbjct 29064714 ATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTC 29064773
Query 282978 TGTTGGTC 282985
|| |||||
Sbjct 29064774 TGCTGGTC 29064781
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 29083995 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 29083937
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 131939449 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 131939391
>seq12
Length=127780087
Score = 113 bits (124), Expect = 9e-20
Identities = 140/190 (74%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| ||| |||||||| ||| || ||||| || ||||| || || ||||||
Sbjct 13420425 TCCTTTTGAATGCTGTAGTCA--AAGTATGT--CCATCTTCCAGTTGCTTGCCAGCAAAG 13420370
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||| | ||||||| || ||||| | ||||| | |||||||| || ||||| |
Sbjct 13420369 ATCAGTCTTTGTTGGCCAGGAGGAATTCTTTCCTTATTCTGGATCTTGGCCTTTACATTT 13420310
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || || ||||| | | ||| ||||||||||| ||||| || ||| ||||| ||
Sbjct 13420309 TCTATTGTATCCGAGGGCTTGACCTCGAGAGTGATGGTCTTCTCCATCAGGGTCTTCACA 13420250
Query 283089 AATATCTGCA 283098
|| |||||||
Sbjct 13420249 AAAATCTGCA 13420240
>seq4
Length=81198604
Score = 111 bits (122), Expect = 3e-19
Identities = 141/192 (73%), Gaps = 8/192 (4%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||||| |||||||||||||||| || ||| | |||| || || |||||||| ||||||
Sbjct 5807534 TCTTTCTGGATGTTGTAGTCAGACAGGGTGTGCACATCTTCCAGCTGTTTCCCTGCAAAG 5807475
Query 282969 ATCAAACGTTGTTGGTCACCCGGA-ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
||||| | || |||| | ||| | ||| ||||||||||| || || | |
Sbjct 5807474 ATCAACCTCTGCTGGT-TCGGGGAGGTGCCC------TCTTGGATCTTGGCCTTGGCATT 5807422
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||||| ||||| | || || || || ||||| |||||||| ||||| ||||| ||
Sbjct 5807421 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCAC 5807362
Query 283088 GAATATCTGCAT 283099
||| ||||||||
Sbjct 5807361 GAAGATCTGCAT 5807350
>seq8
Length=55920303
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| || | ||| ||||| ||||| | | ||| ||||| ||||| |||||||| |
Sbjct 51506750 CCGCCTCACAGACGAAGCACCAGGCGCAGGGTGGACTCTTTCTGGATATTGTAGTCTGAC 51506809
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| | || ||| | ||| || ||| | || | || || | |||| |||||||| |||
Sbjct 51506810 GGAGCGCAGCCCTTCTCCAGCTGTGTGCCCACGAAAATTAGACGTGGTTGGTCAGGCGGG 51506869
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||||||||||||||| || ||||| || | || | ||||| | |||||
Sbjct 51506870 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCGACC 51506929
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || || ||||| ||| ||| ||||| || | |||||||| ||
Sbjct 51506930 TCAAGGGTAATGGTCTTGCCCATCAGGGTCTTCACAGAGATCTGCATCTT 51506979
>seq26
Length=55103472
Score = 95.1 bits (104), Expect = 3e-14
Identities = 57/60 (95%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 44428560 TTAGTATAGTGGTGAGTATCCCTGCCTGTCACGTGGGAGACCGGGGTTCAATTCCCCGAT 44428501
>seq11
Length=140388259
Score = 93.3 bits (102), Expect = 9e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| ||||| ||||||||| || ||| | | ||||| || ||||| || || ||||||
Sbjct 111013922 TCCTTTTGCATGTTGTAGCCA--AAG--TACATCCATCGTCCAGTTGCTTGCCAGCAAAG 111013977
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
||| | ||| || | ||||| || | || ||||||||||| || ||||| |
Sbjct 111013978 GTCAGTCTTTGCTGATTGGGAGGAATTCCTTTGTTATCTTGGATCTTGGCCTTTACATTT 111014037
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088
|| || | || || | || ||||||| ||||||| | ||| | |||| ||||| | |
Sbjct 111014038 TCTATTGCATCTGAGGGTTTGACTTCGGGAGTGATGGACTTCCTTGTCAGGGTCTTCATG 111014097
Query 283089 AATATCTGCATTTT 283102
|| |||||||| ||
Sbjct 111014098 AAAATCTGCATCTT 111014111
>seq30
Length=117797301
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 30046636 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 30046578
>seq20
Length=149338601
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 9953431 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 9953373
Score = 89.7 bits (98), Expect = 1e-12
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811
||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct 38367974 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 38367916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046585251159266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |