Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11 102 8e-17 seq1 82.4 8e-11 >seq11 Length=140388259 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| || ||||| | |||||| |||||||| | || ||||| | ||||||||| || Sbjct 25930471 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 25930412 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 25930411 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCT 25930352 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 25930351 ACCACACGT 25930343 >seq1 Length=104504130 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 8537 GAACTCCTGACCTCATGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGC 8596 |||||||||| |||| | ||||| || ||||| ||||||| | ||||||||||||||| Sbjct 55675467 GAACTCCTGAGCTCAAGCGATCCTCCAGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGC 55675526 Query 8597 ATGAGCCACCGCGCCTGGCCCTTTAAAAAGTTTT 8630 | ||||||||||| || || || | |||||| Sbjct 55675527 GCGCGCCACCGCGCCCGG--CTGTACAGAGTTTT 55675558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521413172990600