Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq23 129 4e-25
seq24 127 1e-24
seq5 105 5e-18
seq13 104 2e-17
>seq23
Length=109465363
Score = 129 bits (142), Expect = 4e-25
Identities = 156/210 (74%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||||||| || || ||| || |||||||||||||| | || || | || |||
Sbjct 83252566 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCAGCCATCTTCC 83252507
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || ||||||||||| | | |||||| || | || | |||||||| |||
Sbjct 83252506 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 83252447
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||||| |||| | |||||||| || |||||||||| || || |||||
Sbjct 83252446 ATCTTGGCCTTCAC-GTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTT 83252388
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || |||||||||||||||||||||||
Sbjct 83252387 GCCGGTCAGGGTCTTCACGAAGATTTGCAT 83252358
>seq24
Length=78163535
Score = 127 bits (140), Expect = 1e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGC 44179
||||||||||| || ||||| ||| ||||||||| |||||||| || | | |
Sbjct 22107630 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAT 22107689
Query 44180 TCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCC 44239
| || ||||| ||||| || |||||||||| | ||||| || | ||| | ||||||
Sbjct 22107690 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCC 22107749
Query 44240 TTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTA 44299
|| ||| ||||| ||| | || |||| || || | || ||| ||||| | ||
Sbjct 22107750 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTG 22107809
Query 44300 ATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| ||||| ||||| |||||||||||||| ||||||||
Sbjct 22107810 ATGGTCTTCCCCGTCAGGGTCTTCACGAAAATTTGCAT 22107847
>seq5
Length=178027732
Score = 105 bits (116), Expect = 5e-18
Identities = 158/221 (71%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 44120 AGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG--CGAGT-TGG 44176
||||||||||| || ||||| ||| ||||||||| |||||||| || | ||| |
Sbjct 42512303 AGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATAT 42512362
Query 44177 CGCTC-GTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACC 44235
| || || ||||| ||||| || |||||||||| | ||||| || | ||| | ||
Sbjct 42512363 CCATCTATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCC 42512422
Query 44236 TTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCAC 44295
|||||| ||| ||||| ||| | || ||||| | || | || | ||||| |
Sbjct 42512423 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGCTATCCGAGGGCTTGACCTCGAG 42512482
Query 44296 CGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336
|| || ||||| ||||| |||||| ||||||| || ||||
Sbjct 42512483 AGTGATGGTCTTCCCCGTCAGGGTCGTCACGAAAATCTGCA 42512523
Score = 87.8 bits (96), Expect = 1e-12
Identities = 132/185 (71%), Gaps = 2/185 (1%)
Strand=Plus/Plus
Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170
|| || ||||| | | |||||||| || || ||| || |||||||||||||| |
Sbjct 139076888 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 139076947
Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230
|| ||| | || ||||||||||| || |||||||| | | |||||| || | ||
Sbjct 139076948 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 139077007
Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289
| |||||||| ||| ||||| |||| | |||| | |||||||| || |||||
Sbjct 139077008 ATGCCTTCCTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCTCCAC 139077066
Query 44290 CTCCA 44294
|||||
Sbjct 139077067 CTCCA 139077071
>seq13
Length=89791019
Score = 104 bits (114), Expect = 2e-17
Identities = 163/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167
|| || |||| ||| | | ||||| ||| || ||| ||| || ||||| ||||| ||
Sbjct 87684775 ATGCCGCCTCGCAGACGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATATTGTAGTCT 87684716
Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227
| || ||| | || |||||||| || || || ||||||| ||||||||| || |
Sbjct 87684715 GACAGAGTGCGGCCATCCTCCAGCTGTTTGCCCGCGAAGATCAGACGCTGCTGGTCAGGT 87684656
Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTC 44286
|| | || ||||| || || || |||| | ||| | |||||||| || ||
Sbjct 87684655 GGGATGCCCTCCTTGTCTTGGATTTTG-GCTTTGACATTCTCAATGGTGTCACTGGGCTC 87684597
Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||| | || || ||||| ||||| ||||||||||| ||||| |||||
Sbjct 87684596 GACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 87684546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359940037230543
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |