Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq14 179 5e-40 >seq14 Length=103589943 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| || | |||||||||||| |||||||| || ||||| ||||| Sbjct 87015479 GTCTGGAACAACTGCTCATCGCCCCATTCTGGATGCTCTTGTTTAAGCACATCACACACT 87015420 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| ||||| || ||||| |||||||| || ||||| ||||| ||||| Sbjct 87015419 CTGTTGTGTTCCCGCAGCCAAATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 87015360 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | || || ||| || || | || || |||||||| | Sbjct 87015359 ACCTCCTGGCCCACAGCAAACTTCAAGTGTTCAGGAACATGAGGTGGGTAGATCATTTCG 87015300 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| |||||||| | ||| |||||||| || || | |||||||| Sbjct 87015299 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATTAATCATCT 87015251 Score = 152 bits (168), Expect = 7e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 8283 GAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAG 8342 |||| | ||| | || || ||||| || || ||||| || |||| ||||||||||| | Sbjct 87017155 GAACACTGAATGAGGTAAAAGGACAGCCTTTCACGTTACTGCAGATGAGAGACTGAATTG 87017096 Query 8343 TTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACC 8402 || | |||| ||| || || || ||||| || || ||||| |||||||||||| Sbjct 87017095 AGGCAGTGTTGATGATTTTAAAACCTACTTCTCCACCAAAAGTGCTAGGCTTCCAGTACT 87017036 Query 8403 CCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGA 8462 | || || || || || |||| || ||||| |||||||| || || || || | Sbjct 87017035 CAGGAGAACATATAGGATTACCCATAAGTCCTTTCAGGGAGAATGGTGCTCCAGCTTCTA 87016976 Query 8463 GAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACA 8522 ||| |||| || |||||||||| ||||| ||||| || |||| | ||| |||| Sbjct 87016975 CCATGGTCTCCCCAAAGATGGCGTCTGGACGAGGCTTCTCTACCAGAAGGGCGGGATACA 87016916 Query 8523 GCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTC 8582 |||||| || || | ||||||||| || || | || ||||| || ||||| |||| Sbjct 87016915 GCTCCATGGCATCTATGTCTCCGTAGAGCGCTTCTAACTCTGCAGCCATTTCCTTCTCTC 87016856 Query 8583 CTGT 8586 |||| Sbjct 87016855 CTGT 87016852 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| | ||| |||||||| || || ||||| | ||||| ||| | || Sbjct 87014462 TCTTACCCCATGGTTCTTTCCCTTAGTGAAAGCTGGTCCTCGTTCAAAATCTGTCTTGAA 87014403 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || |||||||| | || ||||| |||||||| Sbjct 87014402 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGGGGATC 87014343 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 ||| |||| | || | ||||| ||||| |||||| Sbjct 87014342 AGGAATGAACTTTCTTCTTAGAAGTACTTTTTTCACAAC 87014304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716773937140160