Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq23 163 7e-35
seq24 154 4e-32
seq31 125 2e-23
seq5 120 7e-22
seq11 93.3 1e-13
seq4 91.5 4e-13
>seq23
Length=109465363
Score = 163 bits (180), Expect = 7e-35
Identities = 171/222 (77%), Gaps = 7/222 (3%)
Strand=Plus/Plus
Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969
|||| ||||||| |||| |||||||| || || || || || || ||||| || ||||
Sbjct 83252350 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGG 83252406
Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027
|||| || ||| |||||||||||||||| || ||||| ||||| || ||||| ||
Sbjct 83252407 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 83252464
Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087
|| || |||||||| | || ||||| ||||| |||||||| |||||||| | |||||
Sbjct 83252465 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCT 83252524
Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| | ||||| ||| |||| ||||| || || ||||| || ||
Sbjct 83252525 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 83252566
>seq24
Length=78163535
Score = 154 bits (170), Expect = 4e-32
Identities = 163/215 (76%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|||||||||||||| || || || || || || ||||| |||||||| ||| ||| ||
Sbjct 22107844 CAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 22107785
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || |||||||| ||||| |||||||||
Sbjct 22107784 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 22107725
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || ||||||||| | ||| | | || || ||| |
Sbjct 22107724 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 22107665
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || || || || ||||| || ||||||||
Sbjct 22107664 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 22107630
>seq31
Length=75455120
Score = 125 bits (138), Expect = 2e-23
Identities = 157/215 (73%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||| |||| || || |||| || || ||||| || ||||| || ||| ||
Sbjct 60055365 CAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCGGAT 60055306
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || || || ||||| ||||| || |||||| | ||||| |||||||||
Sbjct 60055305 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAA 60055246
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||| ||||| || || || || || |||||| || | ||| | || || ||| |
Sbjct 60055245 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGTACTTTGACC---TACAACATT 60055189
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
||||| || | || ||||||||||| ||||||||
Sbjct 60055188 CAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACT 60055154
>seq5
Length=178027732
Score = 120 bits (132), Expect = 7e-22
Identities = 129/169 (76%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 177963 CTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAG 178020
|| |||||||| || ||| |||||||||||||||| || ||||| ||||| || |
Sbjct 139077072 CTGGAGGTGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGG 139077015
Query 178021 AAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAA 178080
|||| || || || |||||||| | || ||||| || || || ||||| ||||||||
Sbjct 139077014 AAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCC 139076955
Query 178081 GGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
| |||||| | ||||| ||| |||| ||||| || || ||||| || ||
Sbjct 139076954 GCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 139076906
>seq11
Length=140388259
Score = 93.3 bits (102), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACAC 177985
|||||||||| || || ||||| | | ||| | ||| |||| |||||| || |
Sbjct 76921378 TTTTCGTGAAGACCCTGACAGGGATGAGCATCTCTCTCAAGGTC--AAGCTCTTGGATAT 76921435
Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045
|| || || | || ||||||||||| || |||||| | ||||| ||||||||| |
Sbjct 76921436 GATAGAAAATGCAAAGGCCAAGATTCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAAAG 76921495
Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105
||| ||| | || ||||| | || |||||| || | || | | | || ||| | ||
Sbjct 76921496 ACTGATCATTGCTGGAAAGAAACTGGAAGATAGATGTCCTTTGTCTAACTACAACATTCA 76921555
Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGAC 178137
|| || || || || |||||||| |||||||
Sbjct 76921556 GAAGGAGTCCACTCTTCATCTTGTGTTGAGAC 76921587
>seq4
Length=81198604
Score = 91.5 bits (100), Expect = 4e-13
Identities = 146/207 (71%), Gaps = 11/207 (5%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || | || || || || |||||||| |||||||| || |||
Sbjct 5807353 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 5807410
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||||||| | ||| ||||| | |||| || | | | ||| ||||||
Sbjct 5807411 ACACCATCGAGAATGCCAAGGCCAAGAT------CCAAGAGGGCACCTCCCCGAACCAGC 5807464
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| | | ||||| || || |||||||| ||||||| || || | || || |||
Sbjct 5807465 AGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGTGCACACCCTGTCTGACTACAACA 5807524
Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128
|||| ||||| || || ||||| ||||
Sbjct 5807525 TCCAGAAAGAGTCCACTCTGCA-CTTG 5807550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203554161609926
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |