Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23 163 7e-35 seq24 154 4e-32 seq31 125 2e-23 seq5 120 7e-22 seq11 93.3 1e-13 seq4 91.5 4e-13 >seq23 Length=109465363 Score = 163 bits (180), Expect = 7e-35 Identities = 171/222 (77%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| |||||||| || || || || || || ||||| || |||| Sbjct 83252350 AGGTCAAAATGC---AAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACTCTGGAGG 83252406 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| ||||| || ||||| || Sbjct 83252407 TGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCAT 83252464 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| ||||| |||||||| |||||||| | ||||| Sbjct 83252465 TCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTGGAAGATGGCTGCACTCT 83252524 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | | ||||| ||| |||| ||||| || || ||||| || || Sbjct 83252525 TTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 83252566 >seq24 Length=78163535 Score = 154 bits (170), Expect = 4e-32 Identities = 163/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || || || || || || ||||| |||||||| ||| ||| || Sbjct 22107844 CAAATTTTCGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTCGGAT 22107785 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||||| ||||| ||||||||| Sbjct 22107784 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAA 22107725 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || ||||||||| | ||| | | || || ||| | Sbjct 22107724 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATT 22107665 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || || || || ||||| || |||||||| Sbjct 22107664 CAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 22107630 >seq31 Length=75455120 Score = 125 bits (138), Expect = 2e-23 Identities = 157/215 (73%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||| |||| || || |||| || || ||||| || ||||| || ||| || Sbjct 60055365 CAGATTTTCATGAAGACCCTGACAGTGAAGACCATCACTCTTGAGGTAGAGCCCTCGGAT 60055306 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || || ||||| ||||| || |||||| | ||||| ||||||||| Sbjct 60055305 ACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAA 60055246 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| ||||| || || || || || |||||| || | ||| | || || ||| | Sbjct 60055245 AGACTGATCTTTGCTGGCAAGCAACTGGAAGATAGATGTACTTTGACC---TACAACATT 60055189 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 ||||| || | || ||||||||||| |||||||| Sbjct 60055188 CAAAAGGAGCCCACTCTGCATCTTGTGTTGAGACT 60055154 >seq5 Length=178027732 Score = 120 bits (132), Expect = 7e-22 Identities = 129/169 (76%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 177963 CTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAG 178020 || |||||||| || ||| |||||||||||||||| || ||||| ||||| || | Sbjct 139077072 CTGGAGGTGGA--GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGG 139077015 Query 178021 AAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAA 178080 |||| || || || |||||||| | || ||||| || || || ||||| |||||||| Sbjct 139077014 AAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCC 139076955 Query 178081 GGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||||| | ||||| ||| |||| ||||| || || ||||| || || Sbjct 139076954 GCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGT 139076906 >seq11 Length=140388259 Score = 93.3 bits (102), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACAC 177985 |||||||||| || || ||||| | | ||| | ||| |||| |||||| || | Sbjct 76921378 TTTTCGTGAAGACCCTGACAGGGATGAGCATCTCTCTCAAGGTC--AAGCTCTTGGATAT 76921435 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 || || || | || ||||||||||| || |||||| | ||||| ||||||||| | Sbjct 76921436 GATAGAAAATGCAAAGGCCAAGATTCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAAAG 76921495 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||| ||| | || ||||| | || |||||| || | || | | | || ||| | || Sbjct 76921496 ACTGATCATTGCTGGAAAGAAACTGGAAGATAGATGTCCTTTGTCTAACTACAACATTCA 76921555 Query 178106 AAAAGAATCAACACTGCATCTTGTTTTGAGAC 178137 || || || || || |||||||| ||||||| Sbjct 76921556 GAAGGAGTCCACTCTTCATCTTGTGTTGAGAC 76921587 >seq4 Length=81198604 Score = 91.5 bits (100), Expect = 4e-13 Identities = 146/207 (71%), Gaps = 11/207 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || |||||||| |||||||| || ||| Sbjct 5807353 CAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 5807410 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| | ||| ||||| | |||| || | | | ||| |||||| Sbjct 5807411 ACACCATCGAGAATGCCAAGGCCAAGAT------CCAAGAGGGCACCTCCCCGAACCAGC 5807464 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| || || |||||||| ||||||| || || | || || ||| Sbjct 5807465 AGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGTGCACACCCTGTCTGACTACAACA 5807524 Query 178102 TCCAAAAAGAATCAACACTGCATCTTG 178128 |||| ||||| || || ||||| |||| Sbjct 5807525 TCCAGAAAGAGTCCACTCTGCA-CTTG 5807550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203554161609926