Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq23 289 2e-73 >seq23 Length=36106517 Score = 289 bits (320), Expect = 2e-73 Identities = 468/673 (70%), Gaps = 0/673 (0%) Strand=Plus/Minus Query 18586 TGCAAGCTCGATACAATTTGCGAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTT 18645 |||| || || |||| || || ||||||||||||| | || || || |||||||| | Sbjct 32444953 TGCAGGCGCGCTACAGCCTGAGAGATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCT 32444894 Query 18646 GGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAAC 18705 ||| | || |||||||| |||| ||||||||| || || || || | || |||| Sbjct 32444893 GGAAAGGTGTTTTGGAAGAGCTGTTGTGGTTTATCAAGGGATCCACAAATGCTAATGAAC 32444834 Query 18706 TCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGA 18765 | | | |||| | | | || |||||| | || || | | ||| | | || Sbjct 32444833 TGTCTTCCAAAGGTGTGAAAATTTGGGATGCCAATGGTTCCCGAGACTTTTTGGACAGCC 32444774 Query 18766 ATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGAC 18825 || ||| || ||| | || || | ||||| |||| ||||| |||||| ||| Sbjct 32444773 TGGGGTTCTCCAACAGAGAAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGAC 32444714 Query 18826 ATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGC 18885 ||||||| || ||||| ||||| | ||| | |||| | |||||| | ||||||| Sbjct 32444713 ATTTTGGGGCAGAATACAAAGATAAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGC 32444654 Query 18886 TGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGT 18945 |||||| || || || ||||| ||||| |||||||| | || |||| || | | Sbjct 32444653 TGCAAAAAGTGATCGACACAATCAAAACCAACCCAGATGACAGAAGAATCATCCTGTGTG 32444594 Query 18946 CTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGT 19005 ||||||||||||| ||| | || | |||| |||||||||| || | | || |||| Sbjct 32444593 CTTGGAATCCAAAAGATCTTCCTCTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGT 32444534 Query 19006 TTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCC 19065 | || || | || ||||| | |||||||| || ||||||| || || || ||||||| Sbjct 32444533 TCTATGTGGTGAATGGTGAGCTCTCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCC 32444474 Query 19066 TTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTA 19125 | || || || ||||| ||||| | || | || || |||| ||| | ||||| | | Sbjct 32444473 TGGGTGTGCCCTTCAATATTGCCAGCTACTCCCTGCTCACCTGCATGATTGCGCACATCA 32444414 Query 19126 CAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATC 19185 | || || || |||| ||||| | |||||| |||| |||||||| |||||| |||||| Sbjct 32444413 CCGGCCTGAAGCCCGGCGATTTTGTACATACATTGGGAGATGCACACATTTACCTGAATC 32444354 Query 19186 ATATAGATGCTTTAAAAGTGCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAA 19245 | || || || ||||||||||||| ||| |||| |||||||| || |||| Sbjct 32444353 ACATTGAGCCTCTAAAAGTGCAGCTTCAGCGAGAACCAAGGCCTTTTCCAAAGCTCAAAA 32444294 Query 19246 TTATTCGAAATGT 19258 | ||||||| || Sbjct 32444293 TCCTTCGAAAAGT 32444281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399494067331800