Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq23 271 6e-68 seq7 138 8e-28 seq1 127 1e-24 seq16 95.1 9e-15 >seq23 Length=36106517 Score = 271 bits (300), Expect = 6e-68 Identities = 472/684 (69%), Gaps = 2/684 (0%) Strand=Plus/Plus Query 101587 AATGTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGG 101646 || ||| || ||||| ||||||||||| ||| |||| | | | | || |||| Sbjct 32444247 AAAGTCTTCAGCTTTGAAGTCATCAATCGTCTCAACTTTTCGAAGGATTTTGAGCTTTGG 32444306 Query 101647 AAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGAT 101706 ||| || || || |||| | ||||| ||| |||| |||||||||| | || || Sbjct 32444307 AAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAAT 32444366 Query 101707 GTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAAT 101766 ||| |||||||| | ||||| | ||| || || ||| || |||| || ||||| Sbjct 32444367 GTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAAT 32444426 Query 101767 CATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGC 101826 |||||| || | || || ||||| ||||| || || ||||| || | ||||| || | Sbjct 32444427 CATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCC 32444486 Query 101827 TGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAATTGACTTAATA 101885 ||| || || | || || ||||| |||| ||| |||| ||||| || || | | | Sbjct 32444487 TGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCAC-CACATAGAACTGGCAAAGTG 32444545 Query 101886 CATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACA 101945 |||| || || || || |||| ||||| ||| |||||||||||||| | | Sbjct 32444546 CATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGA 32444605 Query 101946 TCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTC 102005 | ||||| || ||||| ||||| || || || |||| | || | || || |||| Sbjct 32444606 TTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTC 32444665 Query 102006 CTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAA 102065 ||| ||| |||||| | | |||| |||||||| || ||||| | |||||||| Sbjct 32444666 CTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAA 32444725 Query 102066 ATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAA 102125 | ||||| ||||| || | ||||||||| ||||||| | || || || | || |||| Sbjct 32444726 AGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAA 32444785 Query 102126 ATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGT 102185 | || || ||||| ||||||||||| | ||| || | || || || || | Sbjct 32444786 AGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCAT 32444845 Query 102186 CAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCT 102245 || ||||| |||||||||||||||| ||||| | ||||||| |||| || || | | Sbjct 32444846 TTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTT 32444905 Query 102246 TAGTAGTTAAAAGTGGAAATTCAT 102269 | || || | || |||||||||| Sbjct 32444906 TGGTTGTCAGCAGAGGAAATTCAT 32444929 >seq7 Length=65339388 Score = 138 bits (152), Expect = 8e-28 Identities = 96/109 (88%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| |||||||||||| ||||||||||||| || |||||||| Sbjct 33161259 CTTGAGTTCTCTACTGAGAACTACATTAATTCTGTCTTTTAAAGGCCGATTTTTCTCAGG 33161200 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||||||||| ||||||||||||| |||||||||||| || Sbjct 33161199 AATGGAGAACCAAGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 33161151 Score = 105 bits (116), Expect = 5e-18 Identities = 90/111 (81%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| | ||||| |||||||||||| || |||| |||||| |||||||| Sbjct 33167848 AAGTTTATATTTCTTCAAATCAATTTCTGGAAAAAATGTATCACTTTCAAATTCTTGCAT 33167789 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| |||||||||||| ||| || || || | | | || ||||| || Sbjct 33167788 GATCCTTGTCACAAACAGTCTAATATGGCCTGATTTATTTATGGCTTCCTT 33167738 Score = 105 bits (116), Expect = 5e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014 |||| || || |||||| |||||| |||||||||||||||||||||||||| | |||| Sbjct 33173596 AAAACACCTTCTCATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 33173537 Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047 ||||| || |||| ||||||||||| ||| ||| Sbjct 33173536 TCTTCCTGGACATCAGAAAGAACACCTGGGTAT 33173504 >seq1 Length=89887394 Score = 127 bits (140), Expect = 1e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 26949 TGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAAT 27008 ||||| || || | || || |||||||| |||| ||| ||||||||||| |||| || Sbjct 16648264 TGAACGATTGGGGGGACACAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAAG 16648205 Query 27009 GAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACT 27068 || | || ||| || | || | |||||| || || ||||| || | ||| | || Sbjct 16648204 GAGTGGGGACAGTGTGGGGGCTCCCTGCGCAGGACCAGGATCTCCTGCTTGATGGCCACG 16648145 Query 27069 GAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTT 27128 ||||||||||||| ||| | ||||| ||||||| | || || | ||| || || Sbjct 16648144 GAGTTCATGTGGTGGTCCTCTTTCCCTGCAGCATTGATGCAGCCATCATGGCGGCATTTA 16648085 Query 27129 GCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCGA 27173 |||||||| ||||||| ||| ||||| || | || ||||||||| Sbjct 16648084 GCTTCCCAGATCACAGGGGGGTATCTCTCAGGGTCCTCATTGCGA 16648040 >seq16 Length=47638275 Score = 95.1 bits (104), Expect = 9e-15 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| |||||||| || ||||| | ||||||||| ||||| ||||| || | |||||||| Sbjct 10755852 CTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTT 10755911 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | ||||||| | || || || | || ||||| || || ||||| |||||||||| Sbjct 10755912 CTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAA 10755971 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 10755972 TTTTCACACC 10755981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242218392040