Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq23 271 6e-68
seq7 138 8e-28
seq1 127 1e-24
seq16 95.1 9e-15
>seq23
Length=36106517
Score = 271 bits (300), Expect = 6e-68
Identities = 472/684 (69%), Gaps = 2/684 (0%)
Strand=Plus/Plus
Query 101587 AATGTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGG 101646
|| ||| || ||||| ||||||||||| ||| |||| | | | | || ||||
Sbjct 32444247 AAAGTCTTCAGCTTTGAAGTCATCAATCGTCTCAACTTTTCGAAGGATTTTGAGCTTTGG 32444306
Query 101647 AAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGAT 101706
||| || || || |||| | ||||| ||| |||| |||||||||| | || ||
Sbjct 32444307 AAAAGGCCTTGGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAAT 32444366
Query 101707 GTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAAT 101766
||| |||||||| | ||||| | ||| || || ||| || |||| || |||||
Sbjct 32444367 GTGTGCATCTCCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAAT 32444426
Query 101767 CATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGC 101826
|||||| || | || || ||||| ||||| || || ||||| || | ||||| || |
Sbjct 32444427 CATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCC 32444486
Query 101827 TGATCTTTGATACAGTTGACAGGAAAGCTTTCCA-TCACAGACATAAAATTGACTTAATA 101885
||| || || | || || ||||| |||| ||| |||| ||||| || || | | |
Sbjct 32444487 TGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCATTCAC-CACATAGAACTGGCAAAGTG 32444545
Query 101886 CATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACA 101945
|||| || || || || |||| ||||| ||| |||||||||||||| | |
Sbjct 32444546 CATGGCATGGAGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGA 32444605
Query 101946 TCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTC 102005
| ||||| || ||||| ||||| || || || |||| | || | || || ||||
Sbjct 32444606 TTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTC 32444665
Query 102006 CTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAA 102065
||| ||| |||||| | | |||| |||||||| || ||||| | ||||||||
Sbjct 32444666 CTTGACCTGAATAATCTGAATCTTTATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAA 32444725
Query 102066 ATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAA 102125
| ||||| ||||| || | ||||||||| ||||||| | || || || | || ||||
Sbjct 32444726 AGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAA 32444785
Query 102126 ATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGT 102185
| || || ||||| ||||||||||| | ||| || | || || || || |
Sbjct 32444786 AGTCTCGGGAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCAT 32444845
Query 102186 CAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCT 102245
|| ||||| |||||||||||||||| ||||| | ||||||| |||| || || | |
Sbjct 32444846 TTGTGGATCCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTT 32444905
Query 102246 TAGTAGTTAAAAGTGGAAATTCAT 102269
| || || | || ||||||||||
Sbjct 32444906 TGGTTGTCAGCAGAGGAAATTCAT 32444929
>seq7
Length=65339388
Score = 138 bits (152), Expect = 8e-28
Identities = 96/109 (88%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| |||||||||||| ||||||||||||| || ||||||||
Sbjct 33161259 CTTGAGTTCTCTACTGAGAACTACATTAATTCTGTCTTTTAAAGGCCGATTTTTCTCAGG 33161200
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||||||||| ||||||||||||| |||||||||||| ||
Sbjct 33161199 AATGGAGAACCAAGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 33161151
Score = 105 bits (116), Expect = 5e-18
Identities = 90/111 (81%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||||| | ||||| |||||||||||| || |||| |||||| ||||||||
Sbjct 33167848 AAGTTTATATTTCTTCAAATCAATTTCTGGAAAAAATGTATCACTTTCAAATTCTTGCAT 33167789
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166
|||||| |||||||||||| ||| || || || | | | || ||||| ||
Sbjct 33167788 GATCCTTGTCACAAACAGTCTAATATGGCCTGATTTATTTATGGCTTCCTT 33167738
Score = 105 bits (116), Expect = 5e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 3955 AAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTC 4014
|||| || || |||||| |||||| |||||||||||||||||||||||||| | ||||
Sbjct 33173596 AAAACACCTTCTCATTAATCATTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTC 33173537
Query 4015 TCTTCTTGCACATTAGAAAGAACACTTGGATAT 4047
||||| || |||| ||||||||||| ||| |||
Sbjct 33173536 TCTTCCTGGACATCAGAAAGAACACCTGGGTAT 33173504
>seq1
Length=89887394
Score = 127 bits (140), Expect = 1e-24
Identities = 163/225 (72%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 26949 TGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAAT 27008
||||| || || | || || |||||||| |||| ||| ||||||||||| |||| ||
Sbjct 16648264 TGAACGATTGGGGGGACACAGGTGCAGCCCACAGCCACCAGCATCTTCTCCAGCCGGAAG 16648205
Query 27009 GAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACT 27068
|| | || ||| || | || | |||||| || || ||||| || | ||| | ||
Sbjct 16648204 GAGTGGGGACAGTGTGGGGGCTCCCTGCGCAGGACCAGGATCTCCTGCTTGATGGCCACG 16648145
Query 27069 GAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTT 27128
||||||||||||| ||| | ||||| ||||||| | || || | ||| || ||
Sbjct 16648144 GAGTTCATGTGGTGGTCCTCTTTCCCTGCAGCATTGATGCAGCCATCATGGCGGCATTTA 16648085
Query 27129 GCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCGA 27173
|||||||| ||||||| ||| ||||| || | || |||||||||
Sbjct 16648084 GCTTCCCAGATCACAGGGGGGTATCTCTCAGGGTCCTCATTGCGA 16648040
>seq16
Length=47638275
Score = 95.1 bits (104), Expect = 9e-15
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| |||||||| || ||||| | ||||||||| ||||| ||||| || | ||||||||
Sbjct 10755852 CTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTT 10755911
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| ||||||| | || || || | || ||||| || || ||||| ||||||||||
Sbjct 10755912 CTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAA 10755971
Query 102153 TGTGCACGCC 102162
| | ||| ||
Sbjct 10755972 TTTTCACACC 10755981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361242218392040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |