Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq15 116 4e-21 seq9 116 4e-21 seq20 114 2e-20 >seq15 Length=51729835 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 36813225 CTGTTTCTTATACCATA 36813241 Score = 104 bits (114), Expect = 3e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||| |||||||| ||||||||||| || | || || ||||||| | || Sbjct 36820821 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTG 36820880 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 36820881 CTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGG 36820940 Query 54148 TTCCAAGTATAT 54159 |||||||| || Sbjct 36820941 CTCCAAGTAAAT 36820952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 36828774 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 36828833 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || ||||| | ||||| | || || ||| |||| || | || ||| || | Sbjct 36828834 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTATCTA 36828893 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 36828894 GTTCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCAT 36828939 Score = 89.7 bits (98), Expect = 6e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 53389 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 53448 ||| || || |||| || | || || || || ||||| || || || || || || || Sbjct 36815918 ATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAGGCTCCATA 36815977 Query 53449 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||||||| || ||||| | |||||| | || ||||| | || ||||| ||||| Sbjct 36815978 ATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGACTCTCAAAAGGATA 36816037 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 36816038 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 36816097 Query 53569 CTTATTAGA 53577 ||||| || Sbjct 36816098 TTTATTTGA 36816106 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/151 (73%), Gaps = 3/151 (2%) Strand=Plus/Plus Query 53588 TCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTG 53647 ||||| ||||| ||||| || ||||| ||||||||||| | ||||| |||||| |||||| Sbjct 36816303 TCTGGGATAGGGTAATAGTTTATATCAATAATTTTATTCAAGTTTCGGACAATGACTTTG 36816362 Query 53648 ACCACATCCTTCAGTTTGAGAAAATCAAAT---TGTCCATCTATTACAAACATGTTCAAT 53704 || || || ||| ||| ||| || ||| | | | ||| |||| ||||| Sbjct 36816363 GTGACTTCAGCCAATTTCTTAAAGTCATATGTGTGTTCTGATGTGACATACATATTCAAG 36816422 Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCT 53735 || | || ||||| |||||||| || |||| Sbjct 36816423 GCCAGGGAAGCCAGGTTACAAACTGCAACCT 36816453 >seq9 Length=63840602 Score = 116 bits (128), Expect = 4e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||||||||| | |||||||||||||| |||||||| |||||||| || |||||||| Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGC 25234434 >seq20 Length=39541208 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| | || || || | Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || ||||||||||| || ||||| ||||| |||||||| |||||||| |||| Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291 Query 24277 C 24277 | Sbjct 37615292 C 37615292 Score = 93.3 bits (102), Expect = 5e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 || || || ||||||||||| | || || |||||||| |||||| Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706460099200