Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq4 250 3e-61
seq1 107 2e-18
>seq4
Length=72800252
Score = 250 bits (276), Expect = 3e-61
Identities = 257/336 (76%), Gaps = 0/336 (0%)
Strand=Plus/Minus
Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118
|||||| | |||||| | ||| | | | | ||| | |||| ||||||||||||||||
Sbjct 61402970 CAGGGCTTGGATGTCAGACTCAATGTCGATGGTGGGAAAGCGACGGCTGTACCTGCGCAC 61402911
Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178
||| || || ||||||| ||||||||| |||||||||| ||||||||||||||
Sbjct 61402910 AGGCACACCATCCCGGCCCACCAGGAACTTCTCAAAGTTCCAGGATACGTCGTTGCGGCA 61402851
Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238
||| |||||||||| ||||| || ||||||| ||| ||||| | |||||| || ||
Sbjct 61402850 CACCGGAGACCAGGTAATGAACTTGGGGTCGGTCATGAGCGACGTGGGGTCGTCACTGGG 61402791
Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298
||| || || ||||| | || || || ||||| || || ||| | ||||| || |||||
Sbjct 61402790 CGCAGGGAGAGCCTCCCTCAGAAAAGCAAAGAGGGGGTGCGCCTTCGCACCATTCACCTC 61402731
Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358
|||||| ||||| ||||||||||| |||||||| ||| || || | ||||| ||| ||
Sbjct 61402730 GCACTTTTCGAAAAGCATAAAGTTGGGCTCGAATCCGCCGCCGGGTCTGACGTACTTAAG 61402671
Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || |||||| |||||| || ||||||||
Sbjct 61402670 AGAATTCAGGATCTCTTCATTCTTGGTATTTTCCTG 61402635
Score = 168 bits (186), Expect = 8e-37
Identities = 164/211 (78%), Gaps = 0/211 (0%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || ||||| ||||| |||||||| || || || ||||| ||| | | ||| | ||
Sbjct 61402391 CCTGATGCCCGAATTGGTTGCACGGGAAACCGAGTACGACCAGGCCCTGGGGTCCCAAGC 61402332
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
||||||||||||||||||| || || || ||||||||||| | |||||||| || || |
Sbjct 61402331 GCCGCTGCAGCTCGTTCATTTGGGTATAGTCCCGGACCGTTGTTCCTCAGAGCGAGGCCA 61402272
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||| || ||||| ||| |||| | | | | || |||| |||||| || || ||||
Sbjct 61402271 CATTCTCAATCAGCAACACCTTGCCCTGCAGGGAACCCAAGCACACAGGCTCCCCGCCGG 61402212
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601
| |||||| || ||||||| |||||| ||
Sbjct 61402211 CCAGCGGGCGCGCAGAGAAGGAGTACACTGA 61402181
>seq1
Length=89887394
Score = 107 bits (118), Expect = 2e-18
Identities = 203/290 (70%), Gaps = 13/290 (4%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| | || ||| ||||||||| || |||
Sbjct 50317485 GCAGCTGCGCAGCATCTACGAGAGCAGTCTC-TCCATCGGCAACTTCGCCTCACGCCTGC 50317427
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||||| || || | |||||||
Sbjct 50317426 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAACAGTACAACTGCA 50317367
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584
||||||| |||||||| |||| || |||||| ||| | | |||| || |||
Sbjct 50317366 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTGCCGCAT---CAAGCTCATTCGCCAC 50317311
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
|| |||||| |||| |||| ||| ||||| ||||| |||| ||||| ||
Sbjct 50317310 TACGTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTCTGGACGCTGGAGTTCGTG 50317251
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
| ||||||||||||||||||||||| | |||||| || ||||||
Sbjct 50317250 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 50317203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608781275681600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |