Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4 250 3e-61 seq1 107 2e-18 >seq4 Length=72800252 Score = 250 bits (276), Expect = 3e-61 Identities = 257/336 (76%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 83059 CAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCAC 83118 |||||| | |||||| | ||| | | | | ||| | |||| |||||||||||||||| Sbjct 61402970 CAGGGCTTGGATGTCAGACTCAATGTCGATGGTGGGAAAGCGACGGCTGTACCTGCGCAC 61402911 Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 ||| || || ||||||| ||||||||| |||||||||| |||||||||||||| Sbjct 61402910 AGGCACACCATCCCGGCCCACCAGGAACTTCTCAAAGTTCCAGGATACGTCGTTGCGGCA 61402851 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 ||| |||||||||| ||||| || ||||||| ||| ||||| | |||||| || || Sbjct 61402850 CACCGGAGACCAGGTAATGAACTTGGGGTCGGTCATGAGCGACGTGGGGTCGTCACTGGG 61402791 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||| || || ||||| | || || || ||||| || || ||| | ||||| || ||||| Sbjct 61402790 CGCAGGGAGAGCCTCCCTCAGAAAAGCAAAGAGGGGGTGCGCCTTCGCACCATTCACCTC 61402731 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAG 83358 |||||| ||||| ||||||||||| |||||||| ||| || || | ||||| ||| || Sbjct 61402730 GCACTTTTCGAAAAGCATAAAGTTGGGCTCGAATCCGCCGCCGGGTCTGACGTACTTAAG 61402671 Query 83359 GGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || |||||| |||||| || |||||||| Sbjct 61402670 AGAATTCAGGATCTCTTCATTCTTGGTATTTTCCTG 61402635 Score = 168 bits (186), Expect = 8e-37 Identities = 164/211 (78%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || ||||| ||||| |||||||| || || || ||||| ||| | | ||| | || Sbjct 61402391 CCTGATGCCCGAATTGGTTGCACGGGAAACCGAGTACGACCAGGCCCTGGGGTCCCAAGC 61402332 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 ||||||||||||||||||| || || || ||||||||||| | |||||||| || || | Sbjct 61402331 GCCGCTGCAGCTCGTTCATTTGGGTATAGTCCCGGACCGTTGTTCCTCAGAGCGAGGCCA 61402272 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| || ||||| ||| |||| | | | | || |||| |||||| || || |||| Sbjct 61402271 CATTCTCAATCAGCAACACCTTGCCCTGCAGGGAACCCAAGCACACAGGCTCCCCGCCGG 61402212 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGA 83601 | |||||| || ||||||| |||||| || Sbjct 61402211 CCAGCGGGCGCGCAGAGAAGGAGTACACTGA 61402181 >seq1 Length=89887394 Score = 107 bits (118), Expect = 2e-18 Identities = 203/290 (70%), Gaps = 13/290 (4%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| | || ||| ||||||||| || ||| Sbjct 50317485 GCAGCTGCGCAGCATCTACGAGAGCAGTCTC-TCCATCGGCAACTTCGCCTCACGCCTGC 50317427 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||||| || || | ||||||| Sbjct 50317426 TGGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGCAAACAGTACAACTGCA 50317367 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 ||||||| |||||||| |||| || |||||| ||| | | |||| || ||| Sbjct 50317366 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTGCCGCAT---CAAGCTCATTCGCCAC 50317311 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| ||||| ||||| |||| ||||| || Sbjct 50317310 TACGTGCAGCTGCTCTACCCCCGGGCCAAAAACGACCGCGTCTGGACGCTGGAGTTCGTG 50317251 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||||||||||||||||||||| | |||||| || |||||| Sbjct 50317250 GGCAAACTGGACGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 50317203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608781275681600