Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq23 268 6e-67 seq16 91.5 1e-13 >seq23 Length=36106517 Score = 268 bits (296), Expect = 6e-67 Identities = 483/700 (69%), Gaps = 6/700 (1%) Strand=Plus/Plus Query 96961 GCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTG 97020 ||||| || |||||||| | ||| |||| | || || |||| |||||||| Sbjct 32444257 GCTTTGAAGTCATCAATCGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGAAAAGGCCTT 32444316 Query 97021 GGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCT 97080 || |||| ||||||| || | |||| ||||||||||||| |||||||| |||||| Sbjct 32444317 GGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCT 32444376 Query 97081 CCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTT 97140 || || || || | ||| || || || | | |||| || || ||||| || || Sbjct 32444377 CCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTG 32444436 Query 97141 AATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGA 97200 | || || ||||| ||||| || || ||||| || || ||||| || |||| || || Sbjct 32444437 AGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGG 32444496 Query 97201 TATAACTGACAGGAAAGCTTTCCA-TCACACACATAAAACTGACTCAATACATGACAGGG 97259 | || ||| ||||| |||| ||| |||| |||||| ||||| | | | |||| || || Sbjct 32444497 TGTAGCTGGCAGGAGAGCTCACCATTCAC-CACATAGAACTGGCAAAGTGCATGGCATGG 32444555 Query 97260 GGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATC 97319 || || ||||| |||| |||| |||||||||||||| | |||||||| || Sbjct 32444556 AGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTC 32444615 Query 97320 GGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACC 97379 |||||| || | || || | || | | | | ||||| || |||| || Sbjct 32444616 ATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGA 32444675 Query 97380 ATAAT-TG-TGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAA 97437 ||||| || ||| | ||| |||||||| |||||||| | ||| || || |||||| Sbjct 32444676 ATAATCTGAATCTT--TATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAA 32444733 Query 97438 ACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTA 97497 ||||| || | |||||||||||||| | |||| || || | || ||| || | Sbjct 32444734 ACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGG 32444793 Query 97498 GATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGAT 97557 || ||||| ||||||||||| | |||||| | | || || || | || ||| Sbjct 32444794 GAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGAT 32444853 Query 97558 CCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTT 97617 || ||||||||||||||| ||||||| ||||||| |||| || || | || ||||| Sbjct 32444854 CCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTC 32444913 Query 97618 AAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCA 97657 | |||||||| || | | | |||||| | | ||||| Sbjct 32444914 AGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCA 32444953 >seq16 Length=47638275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||| | ||| || || ||||||||||| || | |||||||||||| Sbjct 10755857 TATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCT 10755916 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 || | |||| || || | || ||| || | || ||||| ||||||||||| | | Sbjct 10755917 CTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTC 10755976 Query 97522 ACACC 97526 ||||| Sbjct 10755977 ACACC 10755981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775378082800