Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq23 268 6e-67
seq16 91.5 1e-13
>seq23
Length=36106517
Score = 268 bits (296), Expect = 6e-67
Identities = 483/700 (69%), Gaps = 6/700 (1%)
Strand=Plus/Plus
Query 96961 GCTTTAAAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTG 97020
||||| || |||||||| | ||| |||| | || || |||| ||||||||
Sbjct 32444257 GCTTTGAAGTCATCAATCGTCTCAACTTTTCGAAGGATTTTGAGCTTTGGAAAAGGCCTT 32444316
Query 97021 GGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCT 97080
|| |||| ||||||| || | |||| ||||||||||||| |||||||| ||||||
Sbjct 32444317 GGTTCTCGCTGAAGCTGCACTTTTAGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCT 32444376
Query 97081 CCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTT 97140
|| || || || | ||| || || || | | |||| || || ||||| || ||
Sbjct 32444377 CCCAATGTATGTACAAAATCGCCGGGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTG 32444436
Query 97141 AATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGA 97200
| || || ||||| ||||| || || ||||| || || ||||| || |||| || ||
Sbjct 32444437 AGCAGGGAGTAGCTGGCAATATTGAAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGG 32444496
Query 97201 TATAACTGACAGGAAAGCTTTCCA-TCACACACATAAAACTGACTCAATACATGACAGGG 97259
| || ||| ||||| |||| ||| |||| |||||| ||||| | | | |||| || ||
Sbjct 32444497 TGTAGCTGGCAGGAGAGCTCACCATTCAC-CACATAGAACTGGCAAAGTGCATGGCATGG 32444555
Query 97260 GGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATC 97319
|| || ||||| |||| |||| |||||||||||||| | |||||||| ||
Sbjct 32444556 AGGTAAGGCCATCAGAGGAAGATCTTTTGGATTCCAAGCACACAGGATGATTCTTCTGTC 32444615
Query 97320 GGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACC 97379
|||||| || | || || | || | | | | ||||| || |||| ||
Sbjct 32444616 ATCTGGGTTGGTTTTGATTGTGTCGATCACTTTTTGCAGCTGATCTACTCCTTGACCTGA 32444675
Query 97380 ATAAT-TG-TGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAA 97437
||||| || ||| | ||| |||||||| |||||||| | ||| || || ||||||
Sbjct 32444676 ATAATCTGAATCTT--TATCTTTGTATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAA 32444733
Query 97438 ACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTA 97497
||||| || | |||||||||||||| | |||| || || | || ||| || |
Sbjct 32444734 ACAGGGCCTAAATCTCCTTCTTCTCTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGG 32444793
Query 97498 GATCCATTTGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGAT 97557
|| ||||| ||||||||||| | |||||| | | || || || | || |||
Sbjct 32444794 GAACCATTGGCATCCCAAATTTTCACACCTTTGGAAGACAGTTCATTAGCATTTGTGGAT 32444853
Query 97558 CCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTT 97617
|| ||||||||||||||| ||||||| ||||||| |||| || || | || |||||
Sbjct 32444854 CCCTTGATAAACCACAACAGCTCTTCCAAAACACCTTTCCAGAAAACACGTTTGGTTGTC 32444913
Query 97618 AAGAGAGGAAAATCCTTTTCTAAGCTGTATCTAGACTGCA 97657
| |||||||| || | | | |||||| | | |||||
Sbjct 32444914 AGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCCTGCA 32444953
>seq16
Length=47638275
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
|||||||| |||||||| | ||| || || ||||||||||| || | ||||||||||||
Sbjct 10755857 TATTCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCT 10755916
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521
|| | |||| || || | || ||| || | || ||||| ||||||||||| | |
Sbjct 10755917 CTGTTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTC 10755976
Query 97522 ACACC 97526
|||||
Sbjct 10755977 ACACC 10755981
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346775378082800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |