Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq23 1270 0.0
seq6 118 7e-22
>seq23
Length=36106517
Score = 1270 bits (1408), Expect = 0.0
Identities = 1146/1433 (80%), Gaps = 28/1433 (2%)
Strand=Plus/Minus
Query 107219 TTCTGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCT-CCACC 107277
||| || |||||| ||| ||||||||||||||||||||| ||| || ||| || ||
Sbjct 11640506 TTCAGGGTTAGTTCATAACCGAAGGCATTTTGTTCTGTCCAAAGAT-TCTACCTTCCTCC 11640448
Query 107278 TTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGA 107337
| || ||| |||||||| | |||| | |||||| |||| | |||||||| |
Sbjct 11640447 T---CTCTGCTCAAACTCTACCACTCTCTTAATCCATGAGGATGAATTGGTGGAAGTGG- 11640392
Query 107338 AGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTT 107397
|||| ||| | ||| | | ||||||||||||||||| | |||||| || |||||
Sbjct 11640391 -GCTT-GCCATCGGCATTACCGCTGGGCCCTGGGCTGCTACGTACTGCTGACCATTGTTG 11640334
Query 107398 CTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGG 107457
| ||| |||||| ||||| || |||||||| | ||||| ||||| |||
Sbjct 11640333 CAGTGAAACTTTCTCTCAGATTGAAATGTGACTTTAATTCCCTGGATTTGG--------- 11640283
Query 107458 ACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGA 107517
|| | | ||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 11640282 -----CAAAC-CTGCACTGTAGGGACATTGTGTACAAGTCCCTGAAGCTGCCAGCAAAGA 11640229
Query 107518 GATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCC 107577
||| |||||||||||| |||||| | ||||||||||||||||||| | |||| | |
Sbjct 11640228 CATCAATCAACTGTTCTAGGATCATTCAAGGGGACCAGGAAGCAGTGATTGAGGCTCAGC 11640169
Query 107578 TAGACAACCTG---GAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCA 107634
| ||||||||| || |||||| |||||| ||||||||| | ||| | |||||||
Sbjct 11640168 TGGACAACCTGCTGGAGAAGAAGAAGAAGCGGAAGCCTCTCACAGAAACCGACTACCTCA 11640109
Query 107635 ACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGA 107694
|||| |||||||||||||||| ||| |||| ||||| |||||||||| |||||||| |
Sbjct 11640108 ACATGACCAGAGACTGTGAGCACTTTAAGGTTCAAAGAAAGTTCATACCATTCCCACTTA 11640049
Query 107695 GTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754
| |||| ||| | || ||||| || || ||||| |||||||||||||| |||||||| |
Sbjct 11640048 GCAAAGGTGAGTTTGAATTCCCTATCGCATACTCTATGGTGGTCCATGAAAAGATTGAGA 11639989
Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814
|||||| |||| ||| |||| |||||||||||||||||| | |||||||| |||||||
Sbjct 11639988 TTTTTGAAAGGCTACTGAGAGCTGTGTATGCCCCTCAGAACGTCTACTGTGTTCACGTGG 11639929
Query 107815 ATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCA 107874
|| ||||||||||| | ||| ||||| || ||||| || |||| ||| |||||| | |
Sbjct 11639928 ATACAAAGTCCCCAGACATTTTTAAAGAAGCAGTCAAAGCAATTACTTCATGCTTCTCAA 11639869
Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934
|||||||| ||||||||||| |||| | |||||||||||| ||||||| ||| ||||| |
Sbjct 11639868 ATGTCTTCTTGGCCAGTAAGATGGTTCGGGTGGTTTATGCTTCCTGGTACAGGGTGCAGG 11639809
Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGA 107994
||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||
Sbjct 11639808 CTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCCCTGTGCCATGGAAATACTTACTGA 11639749
Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGA 108054
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct 11639748 ATACATGCGGGACAGACTTTCCCATAAAGACCAATGCTGAGATTGTCCTGGCCCTCAAGA 11639689
Query 108055 TGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCT 108114
|| |||| || ||||||| ||||||||| ||| ||||| |||| |||| | ||| |
Sbjct 11639688 TGCTGAAAGGGAAGAACAATATGGAGTCAGAGATACCTAGTGAGAGCAAAGCATCTCGTT 11639629
Query 108115 GGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGATGAAGGACCCT 108173
|||| || | | ||||||||| |||| | || || || || ||| ||||| |||
Sbjct 11639628 GGAAGTATCACCATGAGGTGAACGACATAGTGCGCCGAACTGACAGAGA-AAAGGATCCT 11639570
Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233
|||||||| || |||| ||||||||||||||||| ||| | ||||| ||||||||||||
Sbjct 11639569 CCCCCTGACAACATACCTATGTTCACAGGGAATGCTTATATGGTGGCTTCTCGAGCCTTT 11639510
Query 108234 GTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACC 108293
|| || ||| | || || ||||| ||||||| | | | ||||||||| || ||||||
Sbjct 11639509 GTTCAGCATATTTTCGAGAACCCCAAATCCCGACAATTCATTGAATGGGCAAAGGACACC 11639450
Query 108294 TATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCT 108353
|| ||||| ||||||||||| ||||| ||||||||||| || || |||||||||||||||
Sbjct 11639449 TACAGCCCTGACGAACACCTGTGGGCTACCCTTCAGCGGGCACCATGGATGCCTGGCTCT 11639390
Query 108354 GTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413
||||| |||| |||||| |||||||||||||||| || ||||| ||||||| || |||
Sbjct 11639389 GTTCCCCACCACTCCAAGTTTCACATCTCAGACATGGCTTCCATCACCAGGCTGGTGAAG 11639330
Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473
||||||||| || ||||| || || | |||||| ||||||||||| |||||||| |||
Sbjct 11639329 TGGCAGTACATGGAAGGAGAAGTTAGTAAGGGGGCACCTTATGCACCTTGCTCTGGCATC 11639270
Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533
|| | | || | |||| ||||| |||| ||||||||| | ||||| || |||||||||
Sbjct 11639269 CACCAGCGGTCTGTCTGTATTTATGGGGTTGGGGACCTGCATTGGATGCTTCAGAACCAT 11639210
Query 108534 CACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAA 108593
||||| ||||| |||||||||||||| ||||||||||| || | ||| ||||||||||||
Sbjct 11639209 CACCTGTTGGCCAACAAGTTTGACCCAAGGGTGGATGACAATGCCCTTCAGTGCTTAGAA 11639150
Query 108594 GAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGTG 108646
|||||| ||||| |||||||||| || ||||||| || |||| | | |||||
Sbjct 11639149 GAGTACTTACGTTATAAGGCCATATACAGGACTGAGCTCTGAGATTCCCTGTG 11639097
>seq6
Length=67462845
Score = 118 bits (130), Expect = 7e-22
Identities = 202/289 (70%), Gaps = 8/289 (3%)
Strand=Plus/Minus
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
|| |||| || ||||| || ||||| || ||| ||||||||||||| ||||| | | |
Sbjct 33399946 GAGTGGGCAAAGGACACATACAGCCCAGATGAATACCTCTGGGCCACTATTCAGAG-GAT 33399888
Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGAC 108391
|| || | |||| || || | || |||||| |||||| |||| || ||||||
Sbjct 33399887 CCCTGAAGTGCCAGGGTCACTGTCTTTAAGCCAC---AAGTATGACATGTCTGACATGCA 33399831
Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451
||| ||||||||| | ||||||||||||||| || || || | || ||| || ||
Sbjct 33399830 TGCAATCGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGTGCCCC 33399771
Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511
|| | |||||| ||| |||| | | | | | || ||| ||| || |||||| |
Sbjct 33399770 CTACCCGCCCTGCAATGGGGTCCACCTGCGTTCTGTGTGTGTTTTCGGAGCAGGGGACTT 33399711
Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560
| ||||| | || || || ||| | || || || ||||||||| ||
Sbjct 33399710 GAACTGGTTGCTGCACGTTCACCACTTGTTTGCCAATAAGTTTGACACG 33399662
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348260141166960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |