Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq23 1270 0.0 seq6 118 7e-22 >seq23 Length=36106517 Score = 1270 bits (1408), Expect = 0.0 Identities = 1146/1433 (80%), Gaps = 28/1433 (2%) Strand=Plus/Minus Query 107219 TTCTGGATTAGTTTGTAATTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCT-CCACC 107277 ||| || |||||| ||| ||||||||||||||||||||| ||| || ||| || || Sbjct 11640506 TTCAGGGTTAGTTCATAACCGAAGGCATTTTGTTCTGTCCAAAGAT-TCTACCTTCCTCC 11640448 Query 107278 TTGCCTGTGCCCAAACTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGA 107337 | || ||| |||||||| | |||| | |||||| |||| | |||||||| | Sbjct 11640447 T---CTCTGCTCAAACTCTACCACTCTCTTAATCCATGAGGATGAATTGGTGGAAGTGG- 11640392 Query 107338 AGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTT 107397 |||| ||| | ||| | | ||||||||||||||||| | |||||| || ||||| Sbjct 11640391 -GCTT-GCCATCGGCATTACCGCTGGGCCCTGGGCTGCTACGTACTGCTGACCATTGTTG 11640334 Query 107398 CTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGG 107457 | ||| |||||| ||||| || |||||||| | ||||| ||||| ||| Sbjct 11640333 CAGTGAAACTTTCTCTCAGATTGAAATGTGACTTTAATTCCCTGGATTTGG--------- 11640283 Query 107458 ACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGA 107517 || | | ||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 11640282 -----CAAAC-CTGCACTGTAGGGACATTGTGTACAAGTCCCTGAAGCTGCCAGCAAAGA 11640229 Query 107518 GATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCC 107577 ||| |||||||||||| |||||| | ||||||||||||||||||| | |||| | | Sbjct 11640228 CATCAATCAACTGTTCTAGGATCATTCAAGGGGACCAGGAAGCAGTGATTGAGGCTCAGC 11640169 Query 107578 TAGACAACCTG---GAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCA 107634 | ||||||||| || |||||| |||||| ||||||||| | ||| | ||||||| Sbjct 11640168 TGGACAACCTGCTGGAGAAGAAGAAGAAGCGGAAGCCTCTCACAGAAACCGACTACCTCA 11640109 Query 107635 ACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGA 107694 |||| |||||||||||||||| ||| |||| ||||| |||||||||| |||||||| | Sbjct 11640108 ACATGACCAGAGACTGTGAGCACTTTAAGGTTCAAAGAAAGTTCATACCATTCCCACTTA 11640049 Query 107695 GTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAA 107754 | |||| ||| | || ||||| || || ||||| |||||||||||||| |||||||| | Sbjct 11640048 GCAAAGGTGAGTTTGAATTCCCTATCGCATACTCTATGGTGGTCCATGAAAAGATTGAGA 11639989 Query 107755 ACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGG 107814 |||||| |||| ||| |||| |||||||||||||||||| | |||||||| ||||||| Sbjct 11639988 TTTTTGAAAGGCTACTGAGAGCTGTGTATGCCCCTCAGAACGTCTACTGTGTTCACGTGG 11639929 Query 107815 ATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCA 107874 || ||||||||||| | ||| ||||| || ||||| || |||| ||| |||||| | | Sbjct 11639928 ATACAAAGTCCCCAGACATTTTTAAAGAAGCAGTCAAAGCAATTACTTCATGCTTCTCAA 11639869 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 |||||||| ||||||||||| |||| | |||||||||||| ||||||| ||| ||||| | Sbjct 11639868 ATGTCTTCTTGGCCAGTAAGATGGTTCGGGTGGTTTATGCTTCCTGGTACAGGGTGCAGG 11639809 Query 107935 CTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGA 107994 ||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 11639808 CTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCCCTGTGCCATGGAAATACTTACTGA 11639749 Query 107995 ATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGA 108054 ||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||| Sbjct 11639748 ATACATGCGGGACAGACTTTCCCATAAAGACCAATGCTGAGATTGTCCTGGCCCTCAAGA 11639689 Query 108055 TGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCT 108114 || |||| || ||||||| ||||||||| ||| ||||| |||| |||| | ||| | Sbjct 11639688 TGCTGAAAGGGAAGAACAATATGGAGTCAGAGATACCTAGTGAGAGCAAAGCATCTCGTT 11639629 Query 108115 GGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA-AGATGAAGGACCCT 108173 |||| || | | ||||||||| |||| | || || || || ||| ||||| ||| Sbjct 11639628 GGAAGTATCACCATGAGGTGAACGACATAGTGCGCCGAACTGACAGAGA-AAAGGATCCT 11639570 Query 108174 CCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTT 108233 |||||||| || |||| ||||||||||||||||| ||| | ||||| |||||||||||| Sbjct 11639569 CCCCCTGACAACATACCTATGTTCACAGGGAATGCTTATATGGTGGCTTCTCGAGCCTTT 11639510 Query 108234 GTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACC 108293 || || ||| | || || ||||| ||||||| | | | ||||||||| || |||||| Sbjct 11639509 GTTCAGCATATTTTCGAGAACCCCAAATCCCGACAATTCATTGAATGGGCAAAGGACACC 11639450 Query 108294 TATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCT 108353 || ||||| ||||||||||| ||||| ||||||||||| || || ||||||||||||||| Sbjct 11639449 TACAGCCCTGACGAACACCTGTGGGCTACCCTTCAGCGGGCACCATGGATGCCTGGCTCT 11639390 Query 108354 GTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAG 108413 ||||| |||| |||||| |||||||||||||||| || ||||| ||||||| || ||| Sbjct 11639389 GTTCCCCACCACTCCAAGTTTCACATCTCAGACATGGCTTCCATCACCAGGCTGGTGAAG 11639330 Query 108414 TGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATC 108473 ||||||||| || ||||| || || | |||||| ||||||||||| |||||||| ||| Sbjct 11639329 TGGCAGTACATGGAAGGAGAAGTTAGTAAGGGGGCACCTTATGCACCTTGCTCTGGCATC 11639270 Query 108474 CATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCAT 108533 || | | || | |||| ||||| |||| ||||||||| | ||||| || ||||||||| Sbjct 11639269 CACCAGCGGTCTGTCTGTATTTATGGGGTTGGGGACCTGCATTGGATGCTTCAGAACCAT 11639210 Query 108534 CACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAA 108593 ||||| ||||| |||||||||||||| ||||||||||| || | ||| |||||||||||| Sbjct 11639209 CACCTGTTGGCCAACAAGTTTGACCCAAGGGTGGATGACAATGCCCTTCAGTGCTTAGAA 11639150 Query 108594 GAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAGCTGCACTGTG 108646 |||||| ||||| |||||||||| || ||||||| || |||| | | ||||| Sbjct 11639149 GAGTACTTACGTTATAAGGCCATATACAGGACTGAGCTCTGAGATTCCCTGTG 11639097 >seq6 Length=67462845 Score = 118 bits (130), Expect = 7e-22 Identities = 202/289 (70%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335 || |||| || ||||| || ||||| || ||| ||||||||||||| ||||| | | | Sbjct 33399946 GAGTGGGCAAAGGACACATACAGCCCAGATGAATACCTCTGGGCCACTATTCAGAG-GAT 33399888 Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGAC 108391 || || | |||| || || | || |||||| |||||| |||| || |||||| Sbjct 33399887 CCCTGAAGTGCCAGGGTCACTGTCTTTAAGCCAC---AAGTATGACATGTCTGACATGCA 33399831 Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451 ||| ||||||||| | ||||||||||||||| || || || | || ||| || || Sbjct 33399830 TGCAATCGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTTCCAAGGGTGCCCC 33399771 Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511 || | |||||| ||| |||| | | | | | || ||| ||| || |||||| | Sbjct 33399770 CTACCCGCCCTGCAATGGGGTCCACCTGCGTTCTGTGTGTGTTTTCGGAGCAGGGGACTT 33399711 Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 | ||||| | || || || ||| | || || || ||||||||| || Sbjct 33399710 GAACTGGTTGCTGCACGTTCACCACTTGTTTGCCAATAAGTTTGACACG 33399662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260141166960