Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq23 284 1e-71 >seq23 Length=36106517 Score = 284 bits (314), Expect = 1e-71 Identities = 516/755 (68%), Gaps = 0/755 (0%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || | || || || || |||| | || || | | ||||| Sbjct 32444990 GACCGCACGGGCACCGGCACCCTGTCGGTGTTCGGCCTGCAGGCGCGCTACAGCCTGAGA 32444931 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || |||||||| ||| | |||||| | Sbjct 32444930 GATGAATTTCCTCTGCTGACAACCAAACGTGTTTTCTGGAAAGGTGTTTTGGAAGAGCTG 32444871 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 || |||||||| || ||||| |||||| ||| || || ||||| || || ||| Sbjct 32444870 TTGTGGTTTATCAAGGGATCCACAAATGCTAATGAACTGTCTTCCAAAGGTGTGAAAATT 32444811 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCAAGAG 20217 ||| || |||| || | ||||| ||||| || || |||| | |||| Sbjct 32444810 TGGGATGCCAATGGTTCCCGAGACTTTTTGGACAGCCTGGGGTTCTCCAACAGAGAAGAA 32444751 Query 20218 GGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGAC 20277 || ||||| || ||||| ||||| ||||| ||| |||||||||| || ||||| || Sbjct 32444750 GGAGATTTAGGCCCTGTTTATGGCTTTCAGTGGCGACATTTTGGGGCAGAATACAAAGAT 32444691 Query 20278 ATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATT 20337 | | || |||||| || |||||||||||||| | ||||| || || | ||| Sbjct 32444690 AAAGATTCAGATTATTCAGGTCAAGGAGTAGATCAGCTGCAAAAAGTGATCGACACAATC 32444631 Query 20338 AAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||||| |||||| | ||||||||||| || | || || ||||| | |||||| | ||| Sbjct 32444630 AAAACCAACCCAGATGACAGAAGAATCATCCTGTGTGCTTGGAATCCAAAAGATCTTCCT 32444571 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 | ||||| || |||||||| ||| || ||||| || || || | ||| ||| | Sbjct 32444570 CTGATGGCCTTACCTCCATGCCATGCACTTTGCCAGTTCTATGTGGTGAATGGTGAGCTC 32444511 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || || || | | || | || | || ||||| |||||||| || ||||||||||| Sbjct 32444510 TCCTGCCAGCTACACCAGAGGTCAGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCC 32444451 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 || || | ||||| || | |||||||| || | || | | || | || || || Sbjct 32444450 AGCTACTCCCTGCTCACCTGCATGATTGCGCACATCACCGGCCTGAAGCCCGGCGATTTT 32444391 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 || || || | ||||| || || |||||||| ||||| || || ||| ||||| | ||| Sbjct 32444390 GTACATACATTGGGAGATGCACACATTTACCTGAATCACATTGAGCCTCTAAAAGTGCAG 32444331 Query 20638 TTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGATATT 20697 | ||| |||||| | || |||| || || ||||| ||| | ||| Sbjct 32444330 CTTCAGCGAGAACCAAGGCCTTTTCCAAAGCTCAAAATCCTTCGAAAAGTTGAGACGATT 32444271 Query 20698 AACGATTTTAAAGCTGATGATTTTGTGTTAGAAGG 20732 | || || |||||||| || |||| | ||||||| Sbjct 32444270 GATGACTTCAAAGCTGAAGACTTTGAGATAGAAGG 32444236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399174075287800