Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq23 145 2e-29 seq20 84.2 4e-11 >seq23 Length=36106517 Score = 145 bits (160), Expect = 2e-29 Identities = 375/562 (67%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 35247 TTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCA 35306 ||||||||| ||| ||| ||||||| || | |||||| |||| ||| ||| | || | Sbjct 32444899 TTTTCTGGAAAGGTGTTTTGGAAGAGCTGTTGTGGTTTATCAAGGGATCCACAAATGCTA 32444840 Query 35307 AAGAATTGGC--CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTT 35364 | ||| || | | | ||| | | | || ||| | || ||||| || || || ||||| Sbjct 32444839 ATGAACTGTCTTCCA-AAGGTGTGAAA-ATTTGGGATGCCAATGGTTCCCGAGACTTTTT 32444782 Query 35365 GGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCA 35424 |||||| ||||| | | | |||| ||| |||||||| || || || || || || || Sbjct 32444781 GGACAGCCTGGGGTTCTCCAACAGAGAAGAAGGAGATTTAGGCCCTGTTTATGGCTTTCA 32444722 Query 35425 ATGGCGTCATTTTGGTGCTGAAT---ATGATACCTGTTCTTCCGATTATACTGGAAAGGG 35481 ||||| |||||||| || |||| | |||| ||| |||||| | || | || Sbjct 32444721 GTGGCGACATTTTGGGGCAGAATACAAAGATA---AAGATTCAGATTATTCAGGTCAAGG 32444665 Query 35482 TATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGAT 35541 | ||||| || || | | | || | | | || |||||||| ||||| || Sbjct 32444664 AGTAGATCAGCTGCAAAAAGTGATCGACACAATCAAAACCAACCCAGATGACAGAAGAAT 32444605 Query 35542 GATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACAT 35601 || || || |||||||| | ||||||| || ||||| | ||||||||| ||| Sbjct 32444604 CATCCTGTGTGCTTGGAATCCAAAAGATCTTCCTCTGATGGCCTTACCTCCATGC--CAT 32444547 Query 35602 G-AC--TGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAG 35658 | || ||| || || ||||||| ||||| || | || |||||| | | ||| | Sbjct 32444546 GCACTTTGC-CAGTTCTATGTGGTGAATGGTGAGCTCTCCTGCCAGCTACACCAGAGGTC 32444488 Query 35659 CGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCT 35718 ||||| | || |||| ||||||||||||||||| ||||| || || || | Sbjct 32444487 AGGAGACATGGGCCTGGGTGTGCCCTTCAATATTGCCAGCTACTCCCTGCTCACCTGCAT 32444428 Query 35719 GATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACA 35778 ||| || || || || || || || || ||| | | || | || || ||||| Sbjct 32444427 GATTGCGCACATCACCGGCCTGAAGCCCGGCGATTTTGTACATACATTGGGAGATGCACA 32444368 Query 35779 CATTTATAATACCCACATTGAG 35800 |||||| | ||||||||| Sbjct 32444367 CATTTACCTGAATCACATTGAG 32444346 >seq20 Length=39541208 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || ||||| || ||||| |||||||||||||| |||| | || || |||||||||||| Sbjct 37615295 GTGGCCTTCGCGGCAGTGGAAGGAATCTTCTTCTCTGGTTCTTTTGCGTCCATTTTCTGG 37615236 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | || | ||||||| ||||| | |||||||| Sbjct 37615235 CTCAAGAAACGCGGGTTGATGCCTGGCCTCACATTTTCCAATGA 37615192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989558134748200