Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq15 113 6e-20
seq4 111 2e-19
seq9 107 2e-18
seq20 96.9 4e-15
>seq15
Length=51729835
Score = 113 bits (124), Expect = 6e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
|| ||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 36813225 CTGTTTCTTATACCATA 36813241
Score = 102 bits (112), Expect = 1e-16
Identities = 118/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
|| || | |||| | || | || || ||||| || | |||||||| || || ||||||
Sbjct 36825299 CTTGAAAGTTGGGGGCGGTTCGTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAAC 36825358
Query 63702 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63761
|| || |||||||| || ||||| ||||||||||| | || ||||| || ||||||
Sbjct 36825359 CACTTCTCAGAAAGAAGGTTGTATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATT 36825418
Query 63762 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63800
|| || | || | ||| ||||| || || |||||||||
Sbjct 36825419 CCCACAGATACCCTCATCAACATATGTTGTGGTCTTTCA 36825457
Score = 100 bits (110), Expect = 4e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325
|||||||||||| |||||||| ||||||||||| || | || || ||||| | | ||
Sbjct 36820821 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTG 36820880
Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
|| || |||||||| ||||| || | ||| |||||| | | || || ||||||| ||
Sbjct 36820881 CTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGG 36820940
Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418
|||||||| || || | | ||||| || ||
Sbjct 36820941 CTCCAAGTAAATAGCAAATGCCCCAGGTCGCTT 36820973
Score = 93.3 bits (102), Expect = 5e-14
Identities = 134/189 (71%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 62627 ATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTA 62686
||| || ||||||| || | || || || || | ||| || || || || || || ||
Sbjct 36815918 ATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAGGCTCCATA 36815977
Query 62687 ATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATA 62746
||||||||| |||||||| | |||||| | || ||||| || || ||||| |||||
Sbjct 36815978 ATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGACTCTCAAAAGGATA 36816037
Query 62747 ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 62806
| | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 36816038 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 36816097
Query 62807 CTTATTAGA 62815
||||| ||
Sbjct 36816098 TTTATTTGA 36816106
>seq4
Length=72800252
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||| ||||||| ||| ||| | |||||||| || ||||||||||||| |||
Sbjct 34382159 GTTACTTTTTATGATGTATATATTGTTCTGCAAGCTTTTATACTGACTACTGCAGTATTT 34382218
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| ||||| ||| |||||||||||| |||||||| ||||| ||| ||| | ||||
Sbjct 34382219 CTTGGCTTGACTGCATATACTCTACAATCTAAGAGAGACTTCAGCAAATTTGGAGCAGG 34382277
Score = 96.9 bits (106), Expect = 4e-15
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 188174 CTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACAT 188233
||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 34368356 CTCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCACAT 34368415
Query 188234 ACGAATGG 188241
|||||||
Sbjct 34368416 CCGAATGG 34368423
>seq9
Length=63840602
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | ||| || ||||| |||||||| ||||| || || | || ||
Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||||||||| | ||| |||||||| || ||||| || |||||||| |||||||||||
Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGC 25234434
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 25231278 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAGATAAAA 25231219
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 34074
|| || || |||| | | || || ||||||| | | ||| || ||||
Sbjct 25231218 TACTTCTCATCTGATTTAAGCTTGTTCCAATGAGGAAGATCCTTTGATA 25231170
>seq20
Length=39541208
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||| ||||| || ||||| | || || || |
Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||| || ||||| || || || || || |||||||||||||| ||||| || ||||
Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291
Query 33724 C 33724
|
Sbjct 37615292 C 37615292
Score = 96.9 bits (106), Expect = 4e-15
Identities = 85/106 (80%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| || || || || | || || |||||||| ||||| |||||||| |||||
Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
||||| || ||||||||||| | || || |||||||||||||||
Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629801539651200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |