Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 123 2e-23
seq15 87.8 2e-12
>seq9
Length=63840602
Score = 123 bits (136), Expect = 2e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711
|||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| |
Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495
Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771
| | ||||||||||||||||||||| ||||| ||||| || || || ||||| ||||| |
Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435
Query 11772 CTACTACTCTTTCTCC 11787
|||| || ||||| ||
Sbjct 25234434 CTACCACCCTTTCCCC 25234419
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949
|||||| | || || ||||||| |||||| ||||| ||||| |||| ||| || ||
Sbjct 25232058 ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 25231999
Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995
|||||||| ||||||||||| || ||||||| | ||| || |||
Sbjct 25231998 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 25231953
>seq15
Length=51729835
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||||
Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
|| |||||||| | | || |||| || || ||||||||||| || || | || |
Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224
Query 37258 CTATTTCTCAATCCAT 37273
|| ||||| | ||||
Sbjct 36813225 CTGTTTCTTATACCAT 36813240
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || || || || | |||||||| ||||| | ||||| || || || | | ||
Sbjct 36825320 GTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 36825379
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
||||| || || || |||| ||||| | |||||| || | |||||||||||| | |
Sbjct 36825380 TATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATTCCCACAGATACCCTCATCAAC 36825439
Query 38533 ATATGTTGTGGTCTTTC 38549
|||||||||||||||||
Sbjct 36825440 ATATGTTGTGGTCTTTC 36825456
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922
|||| ||||| || ||||| || || ||||| | || |||| | | | |||| ||
Sbjct 36811257 TCCAACCGTAGAAGTGCATGCTAGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 36811316
Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982
||| || || || || || || || |||||||| ||||||||||| | | || | ||
Sbjct 36811317 TCAAAGACTGGCTCTGGTCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 36811376
Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031
| ||||| || ||||| || || ||||| | ||| || | || ||| ||
Sbjct 36811377 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAAATCATCAGG 36811425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468512852617600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |