Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq15 87.8 2e-12 >seq9 Length=63840602 Score = 123 bits (136), Expect = 2e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| ||| | Sbjct 25234554 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCT 25234495 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||||||||||||||||||||| ||||| ||||| || || || ||||| ||||| | Sbjct 25234494 TCAGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGG 25234435 Query 11772 CTACTACTCTTTCTCC 11787 |||| || ||||| || Sbjct 25234434 CTACCACCCTTTCCCC 25234419 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||||| | || || ||||||| |||||| ||||| ||||| |||| ||| || || Sbjct 25232058 ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAGTGAACATTCTCGATGAG 25231999 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCC 11995 |||||||| ||||||||||| || ||||||| | ||| || ||| Sbjct 25231998 AATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACCTCC 25231953 >seq15 Length=51729835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || ||||||||| Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 || |||||||| | | || |||| || || ||||||||||| || || | || | Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 36813225 CTGTTTCTTATACCAT 36813240 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || || || || | |||||||| ||||| | ||||| || || || | | || Sbjct 36825320 GTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 36825379 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 ||||| || || || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 36825380 TATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATTCCCACAGATACCCTCATCAAC 36825439 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||||||||||||||| Sbjct 36825440 ATATGTTGTGGTCTTTC 36825456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 36863 TCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTG 36922 |||| ||||| || ||||| || || ||||| | || |||| | | | |||| || Sbjct 36811257 TCCAACCGTAGAAGTGCATGCTAGTAAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 36811316 Query 36923 TCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATT 36982 ||| || || || || || || || |||||||| ||||||||||| | | || | || Sbjct 36811317 TCAAAGACTGGCTCTGGTCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 36811376 Query 36983 TTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGG 37031 | ||||| || ||||| || || ||||| | ||| || | || ||| || Sbjct 36811377 TCTGAGAGATTTCCCACACAGTCTTATAAAGTTGCTTCAAATCATCAGG 36811425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512852617600