Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 167 3e-36 seq15 116 5e-21 seq9 116 5e-21 seq20 114 2e-20 >seq4 Length=72800252 Score = 167 bits (184), Expect = 3e-36 Identities = 157/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 9231 TTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCCAAG 9290 || |||||| | ||||||||| | ||||| |||| ||| |||||||||||||||||| Sbjct 34385635 TTTTTATTAACTGCTTCCAAAAAGCGCAACAGGTGCAGGAATAGATTGATGATATCCAAG 34385576 Query 9291 TAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAGTGC 9350 |||| ||||| | ||||| ||||| |||||||| || ||| | || || |||||||| Sbjct 34385575 TAGAGGTTGATGGCAGCTAATACATACTCTTCAGGTGATAGCCTGTGCATCAGTGAGTGT 34385516 Query 9351 GTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGCTCC 9410 ||||||||||| |||||||| ||||| | ||| || || | ||||| | ||||| ||| Sbjct 34385515 GTGTCATAGATGATGAATCCACAGAAGAGAAGTGCTCCGACAGCAGCTATAACCAGTTCC 34385456 Query 9411 ACTGTTTCACTTTGCACAAA 9430 | ||| ||||| || | ||| Sbjct 34385455 ATTGTCTCACTATGAAAAAA 34385436 Score = 143 bits (158), Expect = 4e-29 Identities = 103/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| |||||||| |||||||||||||||||||||| ||||| Sbjct 34382277 CCTGCTCCAAATTTGCTGAAGTCTCTCTTAGATTGTAGAGTATATGCAGTCAAGCCAAGA 34382218 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | || |||||||| |||||||| Sbjct 34382217 AATACTGCAGTAGTCAGTATAAAAGCTTGCAGAACAATATATACATCATAAAAAGTAAC 34382159 Score = 96.9 bits (106), Expect = 5e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 ||||||| |||||||| ||||| || ||||| ||||||||||||||||||||||||||| Sbjct 34368423 CCATTCGGATGTGCACGCTGGCGGAGGCCACGCAGCTGCCATAGTTGAAGTCGTCCTCGA 34368364 Query 9907 TGGAGGAG 9914 |||||||| Sbjct 34368363 TGGAGGAG 34368356 >seq15 Length=51729835 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 36813105 ACCTGAAATTCTCCTGACAAAACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 36813164 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 36813165 GATTCATTATTTCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAAGAAGTAAA 36813224 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 36813225 CTGTTTCTTATACCATA 36813241 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || || | |||| | || | || || ||||| || | |||||||| || || |||||| Sbjct 36825299 CTTGAAAGTTGGGGGCGGTTCGTACCAGCATTGAAGAGAGTAGGAGAGGCATGGGTAAAC 36825358 Query 66495 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 66554 || || |||||||| || ||||| ||||||||||| | || ||||| || |||||| Sbjct 36825359 CACTTCTCAGAAAGAAGGTTGTATGTCTCAATAGCAGCATCGATATCGTCTTTGTGAATT 36825418 Query 66555 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 66593 || || | || | ||| ||||| || || ||||||||| Sbjct 36825419 CCCACAGATACCCTCATCAACATATGTTGTGGTCTTTCA 36825457 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||||||||| |||||||| ||||||||||| || | || | ||||||| | || Sbjct 36820821 CACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCGAAGAAAAGGTCTCTGGCACGTTG 36820880 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || |||||||| ||||| || | ||| |||||| | | || || ||||||| || Sbjct 36820881 CTCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGG 36820940 Query 66179 TTCCAAGTATATGGCCATAACTCCAGGCCGTTT 66211 |||||||| || || | | ||||| || || Sbjct 36820941 CTCCAAGTAAATAGCAAATGCCCCAGGTCGCTT 36820973 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || || | | Sbjct 36828774 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCAGGA 36828833 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 ||||||| || ||||| | ||||| | || || ||| |||| || |||| ||| || | Sbjct 36828834 TGGCATAGTCAGGATGCTTAGTAGTCAAGGTCGCAGCTGTTTCTGCAGCCAAAGTATCTA 36828893 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || || ||| | |||| || ||||| || ||||| Sbjct 36828894 GTTCCACAGTGGTCACCCCACTGTATAAGCCCTGGATTACTTTCAT 36828939 Score = 89.7 bits (98), Expect = 7e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 65420 ATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTA 65479 ||| || || |||| || | || || || || ||||| || || || || || || || Sbjct 36815918 ATAGGTCTCATATGTACCATGCTCCTTGGCAAGGTCACAGCTGGCTTCCAAGGCTCCATA 36815977 Query 65480 ATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATA 65539 ||||||||| || ||||| | |||||| | || ||||| | || ||||| ||||| Sbjct 36815978 ATAAATGGTCTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGACTCTCAAAAGGATA 36816037 Query 65540 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 65599 | | |||||||| || ||||| | ||||| || ||||| || || || | ||| | Sbjct 36816038 CCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGCG 36816097 Query 65600 CTTATTAGA 65608 ||||| || Sbjct 36816098 TTTATTTGA 36816106 >seq9 Length=63840602 Score = 116 bits (128), Expect = 5e-21 Identities = 97/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || ||||| || || | ||| |||||||| |||||||| ||||| || || | || || Sbjct 25234552 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATGAGACCTCTTTTCTTC 25234493 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 36300 ||||||||||| | |||||||||||||| |||||||| |||||||| || |||||||| Sbjct 25234492 AGCCAAAATATAGCAGCAAATGATCCAGAGAAGAAAATGCCTTCTACAGCAGCAAAGGC 25234434 >seq20 Length=39541208 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| | || || || | Sbjct 37615172 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAACCCGCGTTTCT 37615231 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| || ||||||||||| || ||||| ||||| |||||||| |||||||| |||| Sbjct 37615232 TGAGCCAGAAAATGGACGCAAAAGAACCAGAGAAGAAGATTCCTTCCACTGCCGCGAAGG 37615291 Query 36300 C 36300 | Sbjct 37615292 C 37615292 Score = 93.3 bits (102), Expect = 6e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 36418 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 36477 |||||||| || || ||||| | || || |||||||| ||||| |||||||| ||||| Sbjct 37616408 ATCTTTAATGTAGGTGTCAATGAGGAGGCTGTACATTTCGGAATGGATGTTTTCCATGGC 37616467 Query 36478 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || || || ||||||||||| | || || |||||||| |||||| Sbjct 37616468 GATCTGGAAGCCGTAGAAACAGCGGGCTTCAGTAATCTGCACTTCT 37616513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156016593600