Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq23 259 4e-64 seq16 107 2e-18 >seq23 Length=36106517 Score = 259 bits (286), Expect = 4e-64 Identities = 488/715 (68%), Gaps = 2/715 (0%) Strand=Plus/Plus Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984 || || |||| ||| || ||||| ||| || || ||||| || || ||||| || || Sbjct 32444341 AGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGTACAAAATCGCCG 32444400 Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044 || ||||||| |||| ||| || |||| | || || |||| ||||||||| || || Sbjct 32444401 GGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTG 32444460 Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104 || || || || ||||||||||| | |||||||||| ||||||||||| ||||| || Sbjct 32444461 AAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCA 32444520 Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164 |||| || ||||| || | | || || ||||| | |||||| | | || || Sbjct 32444521 TTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCT 32444580 Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC 21224 || ||||| || |||| | ||| | | || | || | || ||| || Sbjct 32444581 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCG 32444640 Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284 | ||| | ||||||| || || || ||||| || | | || | |||| Sbjct 32444641 ATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTAT 32444700 Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGG 21344 || ||||||||||||| |||||| || || || || || || | ||| || || | | Sbjct 32444701 TCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTG 32444760 Query 21345 TCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTAC 21403 | ||| ||| | || | |||||||| | ||||| || | || ||||||||||| || Sbjct 32444761 TTGGAGAACCCCAG-GCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCAC 32444819 Query 21404 GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTC 21463 || | |||||||| | | | ||||| ||| |||||||||||| || ||| || Sbjct 32444820 ACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTC 32444879 Query 21464 CACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTT 21523 || || || |||| || || | |||||| || | ||||||||| || || || ||| | Sbjct 32444880 CAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCT 32444939 Query 21524 ATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTG 21583 || || ||||| || |||||||| ||| |||||| |||||| | ||||||| || | Sbjct 32444940 GTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCCTCCTTCCG 32444999 Query 21584 CACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTGG 21638 | |||| | ||| || | ||| ||| |||||||| ||| |||||| Sbjct 32445000 GAAGCCGCAGCGCAGAATGTGCTCGATCTGCCCCAGGTACTGCAACTCCCCGTGG 32445054 >seq16 Length=47638275 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||| ||| || |||| | || || |||| ||||||||| || || || | Sbjct 10752370 TCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGG 10752429 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||| ||||||||||| ||||| || Sbjct 10752430 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCA 10752489 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| | |||||| Sbjct 10752490 CCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 10752533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427765364419200