Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq23 259 4e-64
seq16 107 2e-18
>seq23
Length=36106517
Score = 259 bits (286), Expect = 4e-64
Identities = 488/715 (68%), Gaps = 2/715 (0%)
Strand=Plus/Plus
Query 20925 AGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGCACAAAGTCTCCC 20984
|| || |||| ||| || ||||| ||| || || ||||| || || ||||| || ||
Sbjct 32444341 AGAGGCTCAATGTGATTCAGGTAAATGTGTGCATCTCCCAATGTATGTACAAAATCGCCG 32444400
Query 20985 GGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTA 21044
|| ||||||| |||| ||| || |||| | || || |||| ||||||||| || ||
Sbjct 32444401 GGCTTCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTG 32444460
Query 21045 AACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCC 21104
|| || || || ||||||||||| | |||||||||| ||||||||||| ||||| ||
Sbjct 32444461 AAGGGCACACCCAGGCCCATGTCTCCTGACCTCTGGTGTAGCTGGCAGGAGAGCTCACCA 32444520
Query 21105 CGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCC 21164
|||| || ||||| || | | || || ||||| | |||||| | | || ||
Sbjct 32444521 TTCACCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATCAGAGGAAGATCT 32444580
Query 21165 GCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTGTTAATTAGATCC 21224
|| ||||| || |||| | ||| | | || | || | || ||| ||
Sbjct 32444581 TTTGGATTCCAAGCACACAGGATGATTCTTCTGTCATCTGGGTTGGTTTTGATTGTGTCG 32444640
Query 21225 ACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTAC 21284
| ||| | ||||||| || || || ||||| || | | || | ||||
Sbjct 32444641 ATCACTTTTTGCAGCTGATCTACTCCTTGACCTGAATAATCTGAATCTTTATCTTTGTAT 32444700
Query 21285 TCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGG 21344
|| ||||||||||||| |||||| || || || || || || | ||| || || | |
Sbjct 32444701 TCTGCCCCAAAATGTCGCCACTGAAAGCCATAAACAGGGCCTAAATCTCCTTCTTCTCTG 32444760
Query 21345 TCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTAC 21403
| ||| ||| | || | |||||||| | ||||| || | || ||||||||||| ||
Sbjct 32444761 TTGGAGAACCCCAG-GCTGTCCAAAAAGTCTCGGGAACCATTGGCATCCCAAATTTTCAC 32444819
Query 21404 GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTC 21463
|| | |||||||| | | | ||||| ||| |||||||||||| || ||| ||
Sbjct 32444820 ACCTTTGGAAGACAGTTCATTAGCATTTGTGGATCCCTTGATAAACCACAACAGCTCTTC 32444879
Query 21464 CACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTGAGGTT 21523
|| || || |||| || || | |||||| || | ||||||||| || || || ||| |
Sbjct 32444880 CAAAACACCTTTCCAGAAAACACGTTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCT 32444939
Query 21524 ATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCCCTCTG 21583
|| || ||||| || |||||||| ||| |||||| |||||| | ||||||| || |
Sbjct 32444940 GTAGCGCGCCTGCAGGCCGAACACCGACAGGGTGCCGGTGCCCGTGCGGTCCTCCTTCCG 32444999
Query 21584 CACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTCGCCGTGG 21638
| |||| | ||| || | ||| ||| |||||||| ||| ||||||
Sbjct 32445000 GAAGCCGCAGCGCAGAATGTGCTCGATCTGCCCCAGGTACTGCAACTCCCCGTGG 32445054
>seq16
Length=47638275
Score = 107 bits (118), Expect = 2e-18
Identities = 122/164 (74%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||| ||| || |||| | || || |||| ||||||||| || || || |
Sbjct 10752370 TCAGGCCGGTGATGTGCGCAATCATGCAGGTGAGCAGGGAGTAGCTGGCAATATTGAAGG 10752429
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||| ||||||||||| ||||| ||
Sbjct 10752430 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTATAGCTGGCAGGAGAGCTCACCATTCA 10752489
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152
|||| || ||||| || | | || || ||||| | ||||||
Sbjct 10752490 CCACATAGAACTGGCAAAGTGCATGGCATGGAGGTAAGGCCATC 10752533
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427765364419200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |